Prophage Finder pipeline

Prophage Finder specifications


Unique identifier OMICS_11699
Name Prophage Finder
Interface Web user interface
Restrictions to use None
Input data DNA sequences ranging from 5 kb to 10 Mb
Input format FASTA
Programming languages Perl, PHP
Computer skills Basic
Stability No
Maintained No


This tool is not available anymore.

Publication for Prophage Finder

Prophage Finder IN pipeline

PMCID: 4230813
PMID: 25401060
DOI: 10.1186/s13568-014-0037-8

[…] phylogenetic tree was constructed using the neighbor-joining method (saitou and nei [1987])., the ten p. putida genomes were analyzed for presence of prophages using the phast (phage search tool) prophage finder database (zhou et al. [2011]). insertion sequence (is) elements in the p. putida genomes were identified using the isfinder tool (siguier et al. [2006]; varani et al. [2011]). genomic […]

Prophage Finder institution(s)
Department of Biological Sciences, University of Wisconsin-Parkside, Kenosha, WI, USA

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