Prophage Finder pipeline

Prophage Finder specifications

Information


Unique identifier OMICS_11699
Name Prophage Finder
Interface Web user interface
Restrictions to use None
Input data DNA sequences ranging from 5 kb to 10 Mb
Input format FASTA
Programming languages Perl, PHP
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for Prophage Finder

Prophage Finder IN pipeline

2014
PMCID: 4230813
PMID: 25401060
DOI: 10.1186/s13568-014-0037-8

[…] phylogenetic tree was constructed using the neighbor-joining method (saitou and nei [1987])., the ten p. putida genomes were analyzed for presence of prophages using the phast (phage search tool) prophage finder database (zhou et al. [2011]). insertion sequence (is) elements in the p. putida genomes were identified using the isfinder tool (siguier et al. [2006]; varani et al. [2011]). genomic […]

Prophage Finder institution(s)
Department of Biological Sciences, University of Wisconsin-Parkside, Kenosha, WI, USA

Prophage Finder reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Prophage Finder