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Prophage detection software tools | Genome annotation

Phages are viruses infecting prokaryotes. The sub-group of temperate phages has the capability to remain in their host, in a latent stage, as prophages. Most of the prophages are found integrated in the host chromosome while some are established as…
PHASTER
Web

PHASTER PHAge Search Tool - Enhanced Release

A significant upgrade to the popular PHAST web server for the rapid…

A significant upgrade to the popular PHAST web server for the rapid identification and annotation of prophage sequences within bacterial genomes and plasmids. While the steps in the phage…

G T A T C G C T A
PHAST
Web

PHAST PHAge Search Tool

A web server designed to rapidly and accurately identify, annotate and…

A web server designed to rapidly and accurately identify, annotate and graphically display prophage sequences within bacterial genomes or plasmids. PHAST accepts either raw DNA sequence data or…

Phage…
Web

Phage Classification Tool Set

Provides a mechanism to determine the lifestyle of a phage. PHACTS is a web…

Provides a mechanism to determine the lifestyle of a phage. PHACTS is a web application which utilizes a similarity algorithm and a supervised Random Forest classifier to make a prediction whether…

Phage_Finder
Desktop

Phage_Finder

A heuristic computer program to identify prophage regions within bacterial…

A heuristic computer program to identify prophage regions within bacterial genomes. Phage_Finder uses tab-delimited results from NCBI BLASTALL or WU BLASTP 2.0 searches against a collection of…

ProphET
Desktop

ProphET Prophage Estimation Tool

Recognizes prophages in bacterial genomes. ProphET is based on the nucleotide…

Recognizes prophages in bacterial genomes. ProphET is based on the nucleotide density of phage-like genes composed of three steps: similarity search, prophage density and polishing. It trims the…

HostPhinder
Web
Desktop

HostPhinder

Provides to predict the host genus and species of query phages with an…

Provides to predict the host genus and species of query phages with an easy-to-use tool. The HostPhinder method can be used to make search for phages with appropriate host specificity and for…

PhageTerm
Desktop

PhageTerm

Analyzes DNA termini and phage packaging mechanisms using next-generation…

Analyzes DNA termini and phage packaging mechanisms using next-generation sequencing (NGS) data. The PhageTerm software works with sequencing reads in fastq format and the corresponding assembled…

PhiSpy
Desktop

PhiSpy

An algorithm for finding prophages in microbial genomes that combines…

An algorithm for finding prophages in microbial genomes that combines similarity-based and composition-based strategies. PhiSpy is based on seven distinctive characteristics of prophages, i.e.…

VirSorter
Web
Desktop

VirSorter

Represents a scalable and community-available tool for detecting and…

Represents a scalable and community-available tool for detecting and identifying viral genome sequences from diverse microbial datasets. Its performance for prophage prediction is largely comparable…

Prophinder
Web

Prophinder

Combines similarity searches, statistical detection of phage-gene enriched…

Combines similarity searches, statistical detection of phage-gene enriched regions and genomic context for prophage prediction. A database with prophage predictions in sequenced prokaryotic genomes…

Prophage Finder
Web

Prophage Finder

Predicts prophage loci, based upon clusters of phage-related gene products…

Predicts prophage loci, based upon clusters of phage-related gene products encoded within DNA sequences. Prophage Finder provides results detailing several facets of these clusters to facilitate…

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