Protocols

Prophet specifications

Information


Unique identifier OMICS_31155
Name Prophet
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No
Availability No

Maintainer


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Publication for Prophet

Prophet citation

call_split

Parallel changes in gene expression in peripheral blood mononuclear cells and the brain after maternal separation in the mouse

2009
BMC Res Notes
PMCID: 2759952
PMID: 19781058
DOI: 10.1186/1756-0500-2-195
call_split See protocol

[…] PBMC list using 55 partitions and the Hic list using 60 partitions.The efficiency of PBMC gene expression profiles at predicting the treatment class of samples (i.e. MS or SH) was evaluated with the Prophet module in GEPAS [] using both the K-nearest neighbour (KNN) and Support Vector machine (SVM) algorithm options. Leave-one-out cross validation was used to counter selection bias whilst simulta […]

Prophet institution(s)
Department of Bioinformatics, Centro de Investigacion, Principe Felipe (CIPF), Valencia, Spain; Functional Genomics Node, (INB), Centro de Investigacion Principe Felipe (CIPF), Valencia, Spain
Prophet funding source(s)
Supported by grants from NRC Canada-SEPOCT Spain, project BIO 2005-01078 from the MEC and INDIGO EU project, and the Functional Genomics node (INB) funded by Genoma Espana.

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