ProphET specifications

Information


Unique identifier OMICS_20359
Name ProphET
Alternative name Prophage Estimation Tool
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A bacterial genomic sequence and its correspondent gene annotation.
Input format FASTA, GFF
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements EMBOSS suite, BEDTools suite, BLAST, Perl module Bio::Perl, Perl module SVG, Perl module GD, Perl moduel GD::SVG, Perl module Bio::Graphics, Perl module LWP::Simple, Perl module XML::Simple
Maintained Yes

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Documentation


Maintainers


  • person_outline Gustavo C. Cerqueira <>
  • person_outline João Reis-Cunha <>

Publication for Prophage Estimation Tool

ProphET institution(s)
Broad Institute of Harvard and MIT, Cambridge, MA, USA; Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Brazil
ProphET funding source(s)
Supported in part by Federal funds from the National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health, Department of Health and Human Services [Contract No.: HHSN272200900018C, Grant Number U19AI110818] and by scholarships from CAPES-Brazil.

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