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ProPortal specifications

Information


Unique identifier OMICS_03208
Name ProPortal
Restrictions to use None
Maintained No

Publication for ProPortal

ProPortal citations

 (3)
library_books

Adaptive Evolution of Phosphorus Metabolism in Prochlorococcus

2016
mSystems
PMCID: 5111396
PMID: 27868089
DOI: 10.1128/mSystems.00065-16

[…] d against the MED4 reference genome (NCBI GenBank: BX548174.1). Metabolic genes which were excluded from HMM hits were individually examined using different resources (NCBI, UniProt, IMG, BioCyc, and ProPortal). General and unbalanced reactions were excluded, and extensive manual curation was performed for the gap-filling and balancing process, due in part to the conservative reaction assignment c […]

library_books

Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

2014
Sci Data
PMCID: 4421930
PMID: 25977791
DOI: 10.1038/sdata.2014.34

[…] s constructed from automated MUSCLE alignments of orthologous sequences within each cluster using HMMER. The clusters described here are noted as ‘V4’ CyCOGs in the associated Data Records and on the ProPortal website (Data Citation 1). […]

library_books

Toward a systems level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

2014
Front Genet
PMCID: 4079066
PMID: 25071821
DOI: 10.3389/fgene.2014.00191

[…] nomes available. The curation results in detailed descriptions for many clusters of gene orthologs, which can be retrieved using a search engine with different options (fast/advanced) set by the user.ProPortal (http://proportal.mit.edu/) aims to provide easy access to the growing genetic database devoted to the cyanobacterium Prochlorococcus and its phages; to facilitate its use as a model system […]

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ProPortal institution(s)
Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA

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