ProPred1 statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

ProPred1 specifications

Information


Unique identifier OMICS_05741
Name ProPred1
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


Information


Unique identifier OMICS_05741
Name ProPred1
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for ProPred1

ProPred1 citations

 (19)
call_split

The polymorphisms of LCR, E6, and E7 of HPV 58 isolates in Yunnan, Southwest China

2018
Virol J
PMCID: 5918753
PMID: 29695285
DOI: 10.1186/s12985-018-0986-7
call_split See protocol

[…] The ProPred-I server (http://www.imtech.res.in/raghava/propred1/) and ProPred server (http://www.imtech.res.in/raghava/propred/) were used to predict the major histocompatibility complex (MHC) class-I binding peptides [] and MHC class-II binding peptides […]

call_split

Structure based antigenic epitope and PEGylation improve the efficacy of staphylokinase

2017
Microb Cell Fact
PMCID: 5686944
PMID: 29137636
DOI: 10.1186/s12934-017-0801-y
call_split See protocol

[…] The optimized gene was subcloned into pET28a expression vector (Novagen, U.S.). According to active site (PDB code 2sak and 1bui) and epitope predication (ProPred-I, http://www.imtech.res.in/raghava/propred1/) [, ], five candidate PEGylation sites were selected and mutant to cysteine, including C79G, C82L, C84K, C97A, and C104R, respectively. The mutant Sak gene was amplified from the optimized s […]

library_books

In Silico Perspectives on the Prediction of the PLP’s Epitopes involved in Multiple Sclerosis

2017
PMCID: 5582249
PMID: 28959348
DOI: 10.15171/ijb.1356

[…] for developing T cell epitope prediction. CTLPred (http://www.imtech.res.in/raghava/ctlpred/), which is an ANN and SVM based CTL epitope prediction tool. ProPred-I (http://www.imtech.res.in/raghava/propred1/-), which predicts MHC-I binding regulation in an antigen sequence using quantitative matrices for 47 MHC-I alleles. ProPred (www.imtech.res.in/raghava/propred/), which predicts MHC-II bindi […]

library_books

E6 and E7 Gene Polymorphisms in Human Papillomavirus Types 58 and 33 Identified in Southwest China

2017
PLoS One
PMCID: 5283733
PMID: 28141822
DOI: 10.1371/journal.pone.0171140

[…] ProPred-I server (http://www.imtech.res.in/raghava/propred1/) [] was used to predict the human leukocyte antigen (HLA) class I binding promiscuous epitope(s) at the default settings (allele selection: all, threshold: 4%, tabular results: 4, proteasome […]

library_books

A Platform for Designing Genome Based Personalized Immunotherapy or Vaccine against Cancer

2016
PLoS One
PMCID: 5104390
PMID: 27832200
DOI: 10.1371/journal.pone.0166372

[…] In past, a number of methods have been reported for predicting HLA class I binders including SYFPEITHI [], NetMHC [], ProPred1 [], and nHLAPred []. In the present study, we used standalone version of ProPred1 and nHLAPred for predicting HLA class I binders; both the algorithms predict promiscuous HLA class I binders. […]

library_books

Vaccine Design for H5N1 Based on B and T cell Epitope Predictions

2016
Bioinform Biol Insights
PMCID: 4852757
PMID: 27147821
DOI: 10.4137/BBI.S38378

[…] In addition, class I HLA-bound epitopes were also predicted using the ProPred 1 server on the threshold of 4%, which can be accessed online at the website address of http://www.imtech.res.in/raghava/propred1/. ProPred 1 server is derived from TEPITOPE, namely a matrix program position. The server was developed for 47 class I HLA with an algorithm based on the linear coefficient matrix. shows that […]

Citations

Looking to check out a full list of citations?

ProPred1 institution(s)
Institute of Microbial Technology, Chandigarh, India

ProPred1 reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ProPred1