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Protocols
ProPred1 specifications
Information
| Unique identifier | OMICS_05741 |
|---|---|
| Name | ProPred1 |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
No version available
Maintainer
- person_outline Gajendra Raghava
Information
| Unique identifier | OMICS_05741 |
|---|---|
| Name | ProPred1 |
| Interface | Web user interface |
| Restrictions to use | None |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Gajendra Raghava
Publication for ProPred1
ProPred1 citations
(19)The polymorphisms of LCR, E6, and E7 of HPV 58 isolates in Yunnan, Southwest China
[…] The ProPred-I server (http://www.imtech.res.in/raghava/propred1/) and ProPred server (http://www.imtech.res.in/raghava/propred/) were used to predict the major histocompatibility complex (MHC) class-I binding peptides [] and MHC class-II binding peptides […]
Structure based antigenic epitope and PEGylation improve the efficacy of staphylokinase
[…] The optimized gene was subcloned into pET28a expression vector (Novagen, U.S.). According to active site (PDB code 2sak and 1bui) and epitope predication (ProPred-I, http://www.imtech.res.in/raghava/propred1/) [, ], five candidate PEGylation sites were selected and mutant to cysteine, including C79G, C82L, C84K, C97A, and C104R, respectively. The mutant Sak gene was amplified from the optimized s […]
In Silico Perspectives on the Prediction of the PLP’s Epitopes involved in Multiple Sclerosis
[…] for developing T cell epitope prediction. CTLPred (http://www.imtech.res.in/raghava/ctlpred/), which is an ANN and SVM based CTL epitope prediction tool. ProPred-I (http://www.imtech.res.in/raghava/propred1/-), which predicts MHC-I binding regulation in an antigen sequence using quantitative matrices for 47 MHC-I alleles. ProPred (www.imtech.res.in/raghava/propred/), which predicts MHC-II bindi […]
E6 and E7 Gene Polymorphisms in Human Papillomavirus Types 58 and 33 Identified in Southwest China
[…] ProPred-I server (http://www.imtech.res.in/raghava/propred1/) [] was used to predict the human leukocyte antigen (HLA) class I binding promiscuous epitope(s) at the default settings (allele selection: all, threshold: 4%, tabular results: 4, proteasome […]
A Platform for Designing Genome Based Personalized Immunotherapy or Vaccine against Cancer
[…] In past, a number of methods have been reported for predicting HLA class I binders including SYFPEITHI [], NetMHC [], ProPred1 [], and nHLAPred []. In the present study, we used standalone version of ProPred1 and nHLAPred for predicting HLA class I binders; both the algorithms predict promiscuous HLA class I binders. […]
Vaccine Design for H5N1 Based on B and T cell Epitope Predictions
[…] In addition, class I HLA-bound epitopes were also predicted using the ProPred 1 server on the threshold of 4%, which can be accessed online at the website address of http://www.imtech.res.in/raghava/propred1/. ProPred 1 server is derived from TEPITOPE, namely a matrix program position. The server was developed for 47 class I HLA with an algorithm based on the linear coefficient matrix. shows that […]
Citations
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