ProQ3D specifications

Unique identifier:
OMICS_14652
Interface:
Web user interface
Input data:
Structure models in PDB format, the amino acid target sequence in FASTA format
Output data:
The global and local scores of the models to be predicted
Programming languages:
Python, R
Stability:
Stable
Alternative name:
ProQ3
Restrictions to use:
None
Input format:
PDB, FASTA
Output format:
TXT, ZIP
Computer skills:
Basic
Maintained:
Yes

ProQ3D specifications

Unique identifier:
OMICS_14652
Software type:
Package/Module
Restrictions to use:
None
Input format:
PDB, FASTA
Output format:
TXT, ZIP
Programming languages:
Python, R
Stability:
Stable
Maintained:
Yes
Alternative name:
ProQ3
Interface:
Command line interface
Input data:
Structure models in PDB format, the amino acid target sequence in FASTA format.
Output data:
The global and local scores of the models to be predicted.
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Rosetta, zoo, EMBOSS, numpy, h5py, keras

versioning

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ProQ3D distribution

download

ProQ3D support

Documentation

Maintainers

  • Arne Elofsson <>
  • Nanjiang Shu <>
  • David Menendez Hurtado <>
  • Arne Elofsson <>
  • Nanjiang Shu <>
  • David Menendez Hurtado <>

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Credits

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Publications

Institution(s)

Department of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Solna, Sweden; Bioinformatics Short-term Support and Infrastructure (BILS), Science for Life Laboratory, Solna, Sweden; Department of Physics, Chemistry and Biology (IFM) /Bioinformatics, Linkoping University, Linkoping, Sweden

Funding source(s)

Supported by grants from the Swedish Research Council (VR-NT 2016-03798 and 2012-5270) and Swedish e-Science Research Center.

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