ProQ3D specifications

Information


Unique identifier OMICS_14652
Name ProQ3D
Interface Web user interface
Restrictions to use None
Input data Structure models in PDB format, the amino acid target sequence in FASTA format
Input format PDB, FASTA
Output data The global and local scores of the models to be predicted
Output format TXT, ZIP
Programming languages Python, R
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Arne Elofsson <>
  • person_outline Nanjiang Shu <>
  • person_outline David Menendez Hurtado <>

Information


Unique identifier OMICS_14652
Name ProQ3D
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Structure models in PDB format, the amino acid target sequence in FASTA format.
Input format PDB, FASTA
Output data The global and local scores of the models to be predicted.
Output format TXT, ZIP
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Stability Stable
Requirements Rosetta, zoo, EMBOSS, numpy, h5py, keras
Maintained Yes

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Documentation


Maintainers


  • person_outline Arne Elofsson <>
  • person_outline Nanjiang Shu <>
  • person_outline David Menendez Hurtado <>

ProQ3D articles

ProQ3D institution(s)
Department of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Solna, Sweden; Bioinformatics Short-term Support and Infrastructure (BILS), Science for Life Laboratory, Solna, Sweden; Department of Physics, Chemistry and Biology (IFM) /Bioinformatics, Linkoping University, Linkoping, Sweden
ProQ3D funding source(s)
Supported by grants from the Swedish Research Council (VR-NT 2016-03798 and 2012-5270) and Swedish e-Science Research Center.

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