ProQM-resample | Quality assessment : Protein structure analysis

Uses a support vector machine (SVM) to predict the quality of a membrane protein model by combining structural and sequence-based features calculated from the model. ProQM-resample is a model quality assessment program (MQAP) that was incorporated as scoring function in the Rosetta modelling framework. This gives in one hand full access to the modelling machinery within Rosetta and allows for easy integration with any Rosetta protocol. In particular, ProQM-resample uses the repack protocol to sample side-chain conformations followed by rescoring using ProQM to improve model selection.