ProSA-web pipeline

ProSA-web specifications

Information


Unique identifier OMICS_13656
Name ProSA-web
Alternative name Protein Structure Analysis-web
Software type Application/Script
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Manfred Sippl <>

Information


Unique identifier OMICS_13656
Name ProSA-web
Alternative name Protein Structure Analysis-web
Interface Web user interface
Restrictions to use None
Input data A protein structure
Input format PDB
Output format A z-score, a plot of residue scores, an interactive molecule viewer
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Manfred Sippl <>

Publication for Protein Structure Analysis-web

ProSA-web citations

 (2)
2015
PMCID: 4519542

[…] position was not found to be conserved and hence could alter the structure and may have deleterious effect on ape1 function., substitution of asp148 with 148glu resulted in a slight worsening of prosa-web z-score, from −5.13 to −8.13 (figure 2). the total energy deviation was −3 which may have a very unfavorable effect on the ape1 protein structure and function., molecular dynamics […]

2015
PMCID: 4627185

[…] model for the fusion proteins., assessment of the accuracy and reliability of experimental and theoretical models of protein structures is necessary. for the evaluation of the predicted models, prosa-web (z-score) was used. the z-score from prosa-web indicates overall model quality and measures the deviation of the total energy of the structure with respect to an energy distribution derived […]

ProSA-web institution(s)
Center of Applied Molecular Engineering, Division of Bioinformatics, University of Salzburg, Salzburg, Austria
ProSA-web funding source(s)
This work was supported by FWF Austria (grant n°P13710-MOB).

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