ProSAT specifications

Information


Unique identifier OMICS_12256
Name ProSAT
Alternative name Protein Structure Annotation Tool-plus
Interface Web user interface
Restrictions to use None
Input data A protein structure to display sequence annotations via a PDB id, a UniProt id, or a sequence.
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Wade RC <>

Publications for Protein Structure Annotation Tool-plus

ProSAT in publications

 (2)
PMCID: 5527012
PMID: 28743997
DOI: 10.1038/s41598-017-06822-8

[…] here for e. surinamensis was reported only in a few cases, e.g., the dbc-150 and pbum satdnas family in several drosophila species the psc200 and psc250 families in the rye chromosomes and the prosat, psuchr1sat and psatdna satdnas in two species of hamsters., the complexity of the evolution of satdnas identified in the e. surinamensis genome is reflected by (i) junctions of monomers […]

PMCID: 3674756
PMID: 22741570
DOI: 10.1186/1471-2105-13-153

[…] of the following primary methods: disembl [], disprot(vsl2) [], globplot [], iupred [], pdisorder (softberry, http://linux1.softberry.com/berry.phtml), poodle-s [], poodle-l [], prdos [], prosat (http://glaros.dtc.umn.edu/gkhome/node/456) and ronn []., prediction of rna-binding residues for protein sequences was made using a specialized meta-predictor [] based on three sequence-based […]


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ProSAT institution(s)
Heidelberg Institute for Theoretical Studies (HITS), Heidelberg, Germany; Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Heidelberg, Germany; Center for Molecular Biology at Heidelberg University (ZMBH), DKFZ-ZMBH Alliance and Interdisciplinary Center for Scientific Computing (IWR), Heidelberg, Germany
ProSAT funding source(s)
This work was supported by the Klaus Tschira Foundation and the German Ministry of Education and Research (BMBF) Virtual Liver Network [0315749].

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