PROSESS statistics
PROSESS specifications
Information
Unique identifier | OMICS_17111 |
---|---|
Name | PROSESS |
Alternative name | Protein Structure Evaluation Suite & Server |
Interface | Web user interface |
Restrictions to use | None |
Input data | A 3D protein model, a primary sequence in if the 3D model has missing residues, distance restraints with residue numbers matching the 3D model (optional) and chemical shifts in with residue numbers matching the 3D model (Optional). |
Input format | PDB, fasta, XPLOR, and BMRB NMR-STAR 2.1 or NEF |
Output data | Four "clickable" pages: Global Structure Assessment, Local (Per-residue) Structure Assessment, Graphs and Figures and Similarity Assessment. |
Computer skills | Basic |
Stability | Stable |
Maintained | Yes |
Documentation
- Documentation: http://www.prosess.ca/tutorial.html
Maintainer
- person_outline David Wishart <>
Additional information
Publication for Protein Structure Evaluation Suite & Server
PROSESS in publications
(5)Structural insights into the Middle East respiratory syndrome coronavirus 4a protein and its dsRNA binding mechanism
[…] set to 10 with a step size of 0.02 å. the secondary structure of the modeled protein was validated using protein structure validation suite (psvs) and protein structure evaluation suite and server (prosess). the secondary structure elements of the 3d model were compared with those of the predicted ones in order to measure the structural reliability. the selected p4a model was subjected to md […]
Protein expression, characterization and activity comparisons of wild type and mutant DUSP5 proteins
[…] in our hybrid model was further ascertained by the structure analysis and verification server v4 (saves, see http://services.mbi.ucla.edu) and protein structure evaluation suite and server (prosess, see http://www.prosess.ca/) [], and details of the analysis are compiled in additional file : figure s5., the molecular dynamics simulations were performed using amber 03 force field [] […]
[…] in the center of a water box with 10 å layer from the structure and with periodic conditions. in order to stabilize the system nacl ions were added. correctness of the model was validated using prosess (). the structure was visualized with pymol (http://www.pymol.org/)., the xre binding site was found using the dbtbs database searching tool (http://dbtbs.hgc.jp/) (). when searching […]
In Silico Determination and Validation of Baumannii Acinetobactin Utilization A Structure and Ligand Binding Site
[…] threading programs (fugue, hhsearch, muster, ppa, prospect2, sam-t02, sparksx, sp3, ffas, and prc)., all 3d models of baua structure were qualitatively estimated by 4 various independent servers (prosess,vadar, prosa, and qmean). prosess [] server at http://www.prosess.ca (protein structure evaluation suite & server) is a web server designed to evaluate and validate protein structures […]
In Silico Assessment of Potential Druggable Pockets on the Surface of α1 Antitrypsin Conformers
[…] in the approach presented here. the conformers generated using concoord may be artificially produced but appeared realistic when assessed for geometry and packing by the structure validation server prosess . moreover, the range of cavity characteristics observed was consistent with the variation between crystal structures. although the conformational space of the protein is unlikely to be fully […]
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