PROSHIFT statistics

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PROSHIFT specifications

Information


Unique identifier OMICS_05512
Name PROSHIFT
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PROSHIFT

PROSHIFT in publications

 (3)
PMCID: 4372444
PMID: 25803439
DOI: 10.1371/journal.pone.0122444

[…] of the membrane and relaxed within the all-atom membrane potential (for detail protocol capture see and )., predicted css for the models generated from de novo folding were obtained by running proshift [], sparta+ [], shiftx [], and shiftx2 []. when running proshift, the temperature and ph were set to 30°c and 6.0, respectively. sparta+, shiftx, and shiftx2 were run using default settings. […]

PMCID: 4375973
PMID: 25825683
DOI: 10.7717/peerj.861

[…] chemical shifts. a different approach was used by , where the contribution of the experimental chemical shifts were set relative to 1 or 0 depending on whether or not the difference to the proshift prediction () exceeded a maximum tolerance. the reasoning for not using a quadratic potential was that the experimental nmr data was automatically assigned and a quadratic potential […]

PMCID: 3877219
PMID: 24391900
DOI: 10.1371/journal.pone.0084123

[…] that is being used increasingly in the determination of protein structure and dynamics. this is made possible primarily by empirical chemical shift predictors such as shifts, sparta, shiftx, proshift, and camshift –. while these methods generally offer quite accurate predictions, the predicted chemical shifts of backbone amide protons () tend to be significantly less accurate than, […]


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PROSHIFT institution(s)
University of Washington, Department of Biochemistry, Seattle, WA, USA

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