Protocols

ProStaR specifications

Information


Unique identifier OMICS_18445
Name ProStaR
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.12.18
Stability Stable
Requirements
testthat, BiocStyle, R(>=3.5), data.table, R.utils, htmlwidgets, XML, shiny, DT, shinythemes, webshot, shinyBS, shinyAce, shinyjs, DAPAR(>=1.12.10), DAPARdata(>=1.10.2), rhandsontable, highcharter, later
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


  • person_outline Samuel Wieczorek
  • person_outline Florence Combes
  • person_outline Thomas Burger

Publication for ProStaR

ProStaR citations

 (2)
call_split

The PHD finger protein Spp1 has distinct functions in the Set1 and the meiotic DSB formation complexes

2018
PLoS Genet
PMCID: 5828529
PMID: 29444071
DOI: 10.1371/journal.pgen.1007223
call_split See protocol

[…] accharomyces cerevisiae S288c taxonomy). Only proteins identified with a minimum of two unique + razor peptides were taken into account for further analyses. Statistical analyses were performed using ProStaR []. Proteins identified in the reverse and contaminant databases, proteins only identified by site and proteins exhibiting less than 3 intensity values in one condition were discarded from the […]

call_split

Bdf1 Bromodomains Are Essential for Meiosis and the Expression of Meiotic Specific Genes

2017
PLoS Genet
PMCID: 5261807
PMID: 28068333
DOI: 10.1371/journal.pgen.1006541
call_split See protocol

[…] calculated by MaxQuant. Only proteins identified with a minimum of two unique + razor peptides were taken into account. For statistical analysis of results obtained with Bdf1-TAP triplicates, we used ProStaR []: proteins identified in the reverse and contaminant databases and proteins exhibiting fewer than 6 iBAQ values in a single condition (2 conditions and 2 analytical replicates per biological […]

ProStaR institution(s)
Université Grenoble Alpes, BIG-BGE, Grenoble, France; CEA, BIG-BGE, Grenoble, France; INSERM, BGE, Grenoble, France; Computational Proteomics Unit, Cambridge, UK; Cambridge Center for Proteomics, Cambridge, UK; CNRS, BIG-BGE, Grenoble, France
ProStaR funding source(s)
Supported by ANR-2010-GENOM-BTV-002-01 (ChloroTypes), ANR-10-INBS-08 (ProFI project, ‘Infrastructures Nationales en Biologie et Sante’, ‘Investissements d’Avenir’), EU FP7 program (Prime-XS Project, Contract no. 262067), the Prospectom project (Mastodons 2012 CNRS Challenge) and the BBSRC Strategic Longer and Larger grant (Award BB/L002817/1).

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