ProSTRIP specifications

Information


Unique identifier OMICS_05558
Name ProSTRIP
Interface Web user interface
Restrictions to use None
Input data The ProSTRIP server can be used by providing the PDB-id or by uploading the three-dimensional atomic co-ordinates of a protein structure (PDB file format).
Output data The comprehensive output shows the similar structural repeats in groups and provides visualization of the location and confirmation of various repeats in the tertiary structure.
Computer skills Basic
Stability Stable
Maintained Yes

Publication for ProSTRIP

ProSTRIP citation

library_books

Tandem Repeats in Proteins: Prediction Algorithms and Biological Role

2015
Front Bioeng Biotechnol
PMCID: 4585158
PMID: 26442257
DOI: 10.3389/fbioe.2015.00143

[…] in their ability to identify characteristic symmetries in fold families from CATH, SCOP, and ASTRAL databases, with SymD having an overall better performance. In Sabarinathan et al. (), two methods (ProSTRIP and Swelfe) are compared over well known families of repeat proteins, for the task of detecting periodicity and exact repeat positions. On well known PTR proteins, both methods detect approxi […]

ProSTRIP institution(s)
Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore, India

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