Protocols

ProteDNA specifications

Information


Unique identifier OMICS_08390
Name ProteDNA
Interface Web user interface
Restrictions to use None
Input data Protein sequence(s)
Input format FASTA
Computer skills Basic
Stability No
Maintained Yes

Maintainer


  • person_outline Yen-Jen Oyang

Publication for ProteDNA

ProteDNA citation

call_split

A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

2015
PLoS Comput Biol
PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639
call_split See protocol

[…] ABindRPlus. KYG was predicted with command line using “method_type = 8” option. RBscore_SVM was based on the training set of R246. DBS-PSSM, DBS-Pred, RBRIdent, PPRInt, PRBR, DNABind, RBRDetector and ProteDNA were used with default parameter. The DISPLAR program was provided by Sanbo Qin and was run with default parameters. BindN and BindN+ were used by default parameters, while suffix “_RNA” and […]

ProteDNA institution(s)
Department of Computer Science and Information Engineering, National Taiwan University, Taipei, Taiwan, China

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