PALADIN specifications


Unique identifier OMICS_11455
Name Protein ALignment And Detection INterface
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data PALADIN currently only supports single-end reads (or reads merged with FLASH, PEAR, abyss-mergepairs), and BWA-MEM based alignment.
Output data A SAM/BAM file and a tab delimited UniProt report file
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Matthew MacManes <>

PALADIN article

PALADIN institution(s)
Department of Computer Science, University of New Hampshire, Durham, NH, USA; Hubbard Center for Genome Studies, University of New Hampshire, Durham, NH, USA; Department of Molecular Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA

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