Stores annotations and structures for protein pre-, co- and post-translational modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link modifications. RESID provides information such as dates for database entry and modification, systematic name and Chemical Abstracts Service registry number, alternate names, atomic formula and mass, enzyme activities; indicators for amino-terminal, carboxyl-terminal or peptide chain cross-link modifications; literature citations, keywords and feature table representations for the modification in the Protein Information Resource (PIR) and SWISS-PROT protein sequence databases.
Provides Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase. GOA is a database derived from both automatic predictions and manual curation methods. GO annotation dataset supplies functional information to a wide range of proteins, including those from poorly characterized, non-model organism species.
A comprehensive resource of semantic and functional similarity values. FunSimMat allows ranking disease candidate proteins for OMIM diseases and searching for functional similarity values for proteins (extracted from UniProt), and protein families (Pfam, SMART). FunSimMat provides several different semantic and functional similarity measures for each protein pair using the Gene Ontology annotation from UniProtKB and the Gene Ontology Annotation project at EBI (GOA).
Offers an updated information about Gene Ontologies (GO). Go.db is an R package including annotation maps representing the entire Gene Ontology. This dataset spots associations between GO Biological Process (BP) terms and their ancestors according to the directed acyclic graph (DAG) defined by the Disease Ontology Consortium. This package is updated biannually.
Provides automatic classification and functional annotation of protein sequences based on their homology to characterized templates. HAMAP is based on a collection of expert curated protein family profiles, that are used to determine family membership of protein sequences, and annotation rules. This resource contains more than 200 family profiles and 270 annotation rules. These annotations can be accessed via UniProtKB, or generated by users for their own protein or proteome sequences via the HAMAP-Scan service on the HAMAP website.
Allows users to perform functional analyses using Gene Ontology (GO) annotations in various organisms. DAGViz is a Directed Acyclic Graphs (DAG)-based browser that facilitates the integrative analysis of functional categories associated with a gene product by displaying all DAG-based information for multiple GO terms using a tabulated color chart screen. This resource provides GO annotation datasets for 45 organisms including fungi, protist, animal, plant and bacterial species.