Provides Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase. GOA is a database derived from both automatic predictions and manual curation methods. GO annotation dataset supplies functional information to a wide range of proteins, including those from poorly characterized, non-model organism species.
Provides automatic classification and functional annotation of protein sequences based on their homology to characterized templates. HAMAP is based on a collection of expert curated protein family profiles, that are used to determine family membership of protein sequences, and annotation rules. This resource contains more than 200 family profiles and 270 annotation rules. These annotations can be accessed via UniProtKB, or generated by users for their own protein or proteome sequences via the HAMAP-Scan service on the HAMAP website.
Helps for the description of proteins using a structured controlled vocabulary. FunCat is a comprehensive and functional classification scheme for the annotation of functional genome information. This online resource uses for various applications, including manual genome annotation, automatic functional annotation of predicted genes and analysis of data from large-scale transcriptome and proteome studies.
Stores annotations and structures for protein pre-, co- and post-translational modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link modifications. RESID provides information such as dates for database entry and modification, systematic name and Chemical Abstracts Service registry number, alternate names, atomic formula and mass, enzyme activities; indicators for amino-terminal, carboxyl-terminal or peptide chain cross-link modifications; literature citations, keywords and feature table representations for the modification in the Protein Information Resource (PIR) and SWISS-PROT protein sequence databases.
Provides access to the result of repeat protein domains, obtained from the amplification of population-genetic signal by constructing a motif-based multiple sequence alignment (motif-MSA). Intensification is a resource for annotating variants in 12 protein-protein interactions (PPI) repeat protein domains (RPDs). The database contains data files for ankyrins (ANK), annexins (ANX), armadillos (ARM), cadherin repeats (CA), fibronectin type 2 domains (FN2), fibronectin type 3 domains (FN3), leucine-rich repeats (LRR_TYP), spectrin repeats (SPEC), tetratricopeptide repeats (TPR), ubiquitin-interacting motifs (UIM), WD40 repeats (WD40), and WW domains (WW).
An integrated database for Mycobacterium tuberculosis H37Rv (Mtb) that collates information on protein sequences, domain assignments, functional annotation and 3D structural information along with protein-protein and protein-small molecule interactions. The motivation for development of this database is to provide an integrated platform to allow easily access and interpretation of data and results obtained by all the groups in CamBan in the field of Mtb informatics.
Informs about proteomes. UniGOPred provides function predictions for over 500 molecular function (MF), more than 2900 biological process (BP) and 400 cellular component (CC) gene ontology (GO) terms for each protein sequence. It can serve for automated protein function prediction using all three categories of Gene Ontology (GO). It covers the whole functionality spectrum in Gene Ontology system and it can predict both generic and specific GO terms.
Aids in browsing, searching and accessing complete annotations of data relevant to each mitochondrial protein of interest. PCHM is a database that provides a variety of query algorithms for peptide motif search. It contains strong virtual tandem mass spectrometry (MS/MS) plot algorithms to support all types of mass spectra. This online resource also includes an automatic protein function classifier engine.
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