A high-throughput tool for more reliable functional annotation. PANNZER predicts Gene Ontology (GO) classes and free text descriptions about protein functionality. It uses weighted k-nearest neighbour methods with statistical testing to maximize the reliability of a functional annotation.

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1 user review

Daniel Smith's avatar image

Daniel Smith

Excellent tool!

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PANNZER classification

PANNZER specifications

Software type:
Package
Restrictions to use:
None
Database support:
Yes
Computer skills:
Advanced
Requirements:
Python 2.x, MySQL database, NCBI blastall version 2.2.21
Interface:
Command line interface
Operating system:
Unix/Linux
Database management system:
MySQL
Stability:
Stable

Publications

  • (Koskinen et al., 2015) PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment. Bioinformatics.
    PMID: 25653249

PANNZER support

Maintainer

Credits

Institution(s)

Department of Biosciences, University of Helsinki, 00014 Helsinki, Finland and Institute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland

Link to literature

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