Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Domain movement detection software tools | Protein structure data analysis

From a structural perspective domains in proteins can be regarded as quasi-globular regions. The connections between domains allow their relative movement and consequently domain movements are often engaged in protein function (Bennett and Huber,…
motion…
Desktop

motion detection

Detects rigid-body movements in protein structures. Our model aims to…

Detects rigid-body movements in protein structures. Our model aims to approximate alternative conformational states by a few structural parts that are rigidly transformed under the action of a…

lmcENM
Algorithm

lmcENM learned maintained contacts Elastic Network Model

Intends to enable the general applicability of elastic network models (ENM).…

Intends to enable the general applicability of elastic network models (ENM). ImcENM aims to predict function-related protein motions and capture ligand-coupled localized functional transitions. The…

HYCUD
Desktop

HYCUD HYdrodynamic CoUpling of Domains

A Python-based program for prediction of rotational correlation time of folded…

A Python-based program for prediction of rotational correlation time of folded protein domains in the context of flexible multidomain proteins and protein complexes with long disordered tails and/or…

SPECTRUS
Web
Desktop

SPECTRUS SPECTral-based Rigid Units Subdivision

Identifies dynamical domains in proteins. SPECTRUS uses a dimensional reduction…

Identifies dynamical domains in proteins. SPECTRUS uses a dimensional reduction of the inter-residue distance fluctuations and exploits its properties to single out the intrinsic number and type of…

PSCDB
Dataset

PSCDB Protein Structural Change DataBase

The purpose of this database is to represent the relationship between protein…

The purpose of this database is to represent the relationship between protein structural change and ligand binding.

DynDom
Web

DynDom

A program that determines protein domains, hinge axes and amino acid residues…

A program that determines protein domains, hinge axes and amino acid residues involved in the hinge bending.

RigidFinder
Web
Desktop

RigidFinder

Identifies rigid blocks from two known conformations of a large macromolecular…

Identifies rigid blocks from two known conformations of a large macromolecular complex. RigidFinder can detect rigid blocks as small as four residues in size.The server is interactively linked to a…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.