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Dynamic domain identification software tools | Protein structure data analysis

Structure of most proteins is flexible. Identification and analysis of intramolecular motions is a complex problem. Breaking a structure into relatively rigid parts, so-called dynamic domains, may help comprehend the complexity of protein’s…
ResiCon
Web

ResiCon Residue Contacts analysis

Calculates geometrical variability for pairs of amino acids to constructs a…

Calculates geometrical variability for pairs of amino acids to constructs a contact matrix, for which a spectral clustering is carried out. These clusters correspond to dynamic domains: quasi-rigid…

GeoStaS
Desktop

GeoStaS Geometrically Stable Sustructures

A program with graphical interface which, based on molecular conformations,…

A program with graphical interface which, based on molecular conformations, divides a molecule into "dynamic domains", i.e., parts that stay relatively rigid in all conformations. This…

PiSQRD
Web

PiSQRD

A web resource that can be used to subdivide protein structures in quasi-rigid…

A web resource that can be used to subdivide protein structures in quasi-rigid dynamical domains. The latter are groups of amino acids behaving as approximately rigid units in the course of protein…

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