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Protein expression databases | Sequence analysis

Protein expression, the presence or quantity of a protein in a biological sample, is one of the key measures essential for understanding biological processes.

Human Protein…
Dataset

Human Protein Atlas

A knowledge-based portal with gene-centric expression profiles based on the…

A knowledge-based portal with gene-centric expression profiles based on the annotation of several antibodies towards the same protein target. Because all the data on the Human Protein Atlas are…

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Expression…
Dataset

Expression Atlas

Provides information about gene and protein expression in animal and plant…

Provides information about gene and protein expression in animal and plant samples of different cell types, organism parts, developmental stages, diseases and other conditions. Expression Atlas…

Colorectal…
Dataset

Colorectal cancer atlas

An integrated web-based resource that catalogues the genomic and proteomic…

An integrated web-based resource that catalogues the genomic and proteomic annotations identified in colorectal cancer (CRC) tissues and cell lines. The data catalogued to-date include sequence…

PaxDb
Dataset

PaxDb

A comprehensive absolute protein abundance database, which contains whole…

A comprehensive absolute protein abundance database, which contains whole genome protein abundance information across organisms and tissues.

LoQAtE
Dataset

LoQAtE Localizaiton and Quantitation Atlas of the yeast proteomE

Contains easily accessible and user-friendly information about subcellular…

Contains easily accessible and user-friendly information about subcellular localization and levels for 5330 yeast proteins under three environmental stress conditions and two genetic perturbations.…

YPED
Dataset

YPED Yale Protein Expression Database

Allows users to store, retrieve, and perform integrated analysis of data from…

Allows users to store, retrieve, and perform integrated analysis of data from high throughput proteomic technologies. YPED is a web-accessible database for managing, querying, viewing, interpreting,…

MyMpn
Dataset

MyMpn

An online resource devoted to studying the human pathogen Mycoplasma…

An online resource devoted to studying the human pathogen Mycoplasma pneumoniae, a minimal bacterium causing lower respiratory tract infections. MyMpn hosts a wealth of omics-scale datasets generated…

GeMDBJ Proteomics
Dataset
Varroa protein…
Dataset

Varroa protein atlas

Stores Varroa destructor life cycle proteins. Varroa protein atlas cross all…

Stores Varroa destructor life cycle proteins. Varroa protein atlas cross all major developmental stages (egg, protonymph, deutonymph and adult) for both male and female mites as a web-based…

Protein_ML
Desktop

Protein_ML

Permits analysis of further expression and solubility datasets. Protein_ML…

Permits analysis of further expression and solubility datasets. Protein_ML serves as a template for machine learning on high-throughput expression and solubility data. It reconciles systems-level,…

BrainTrap
Dataset

BrainTrap

This database contains information on protein expression in the Drosophila…

This database contains information on protein expression in the Drosophila melanogaster brain.

Human…
Dataset

Human Proteinpedia

A community portal for sharing and integration of human protein data. It allows…

A community portal for sharing and integration of human protein data. It allows research laboratories to contribute and maintain protein annotations. Human Protein Reference Database (HPRD)…

Worm PES
Dataset

Worm PES

A large database resource and suite of data visualization tools designed to…

A large database resource and suite of data visualization tools designed to interrogate how the abundance of proteins and their isoforms change as a function of developmental stage in Caenorhabditis…

READ DB
Dataset

READ DB RNA Binding Protein Expression and Disease Dynamics database

A non-redundant, curated database of human RNA binding proteins (RBPs). RBPs…

A non-redundant, curated database of human RNA binding proteins (RBPs). RBPs curated from different experimental studies are reported with their annotation, tissue-wide RNA and protein expression…

Aureolib
Dataset

Aureolib

Provides easy and intuitive access to protein synthesis data derived from…

Provides easy and intuitive access to protein synthesis data derived from various proteomics experiments. Aureolib is by far the most comprehensive protein expression database for S. aureus and…

MOPED
Dataset

MOPED Multi-Omics Profiling Expression Database

Presents consistently processed data for gene, protein and pathway expression.…

Presents consistently processed data for gene, protein and pathway expression. To improve data quality, consistency and use, MOPED includes metadata detailing experimental design and analysis…

SysPIMP
Dataset

SysPIMP SYStematic Platform for Identifying Mutated Protein

Contains human disease-related mutated sequences. SysPIMP comprises about 35…

Contains human disease-related mutated sequences. SysPIMP comprises about 35 500 non-redundant human disease-related mutated proteins of which about 21 500 were from OMIM, 700 from PMD and 15 300…

TISSUES
Dataset

TISSUES

Integrates evidence on tissue expression from manually curated literature,…

Integrates evidence on tissue expression from manually curated literature, proteomics and transcriptomics screens, and automatic text mining. When searching for a human protein, the user is presented…

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