PiNAT specifications

Unique identifier:
OMICS_20062
Software type:
Application/Script
Restrictions to use:
None
Output data:
A visual description of the predicted spatial flow of a pathway in the cell and a list of scores for each interaction, based on different sequence-level analyses of the individual proteins.
Computer skills:
Advanced
Maintained:
Yes
Name:
Protein interaction Network Assessment Tool
Interface:
Command line interface
Input data:
A list of protein names (UniProt, Swissprot / Trebml, Genbank or DIP) or your own network.
Operating system:
Unix/Linux
Stability:
Stable

versioning

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PiNAT support

Maintainer

  • Pinat Team <>

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Credits

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Publications

Institution(s)

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA; Columbia University Center for Computational Biology and Bioinformatics (C2B2), New York, NY, USA; NorthEast Structural Genomics Consortium (NESG), Columbia University, New York, NY, USA; Department of Biomedical Informatics, Columbia University, New York, NY, USA

Funding source(s)

Supported by the grants: RO1-GM64633-01 from the National Institutes of Health (NIH) and the grant RO1-LM07329-01 from the National Library of Medicine (NLM).

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