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Knot detection software tools | Protein structure data analysis

Knotted proteins are more commonly observed in recent years due to the enormously growing number of structures in the Protein Data Bank (PDB). Studies show that the knot regions contribute to both ligand binding and enzyme activity in proteins such…
LassoProt
Web

LassoProt

A server and database of proteins with lassos. LassoProt collects information…

A server and database of proteins with lassos. LassoProt collects information about proteins and other (bio)polymers with lassos. LassoProt detects loops (closed by cysteine, as well as amide, ester,…

PyLasso
Desktop

PyLasso

Analyzes properties of lassos. PyLasso is a a PyMOL plugin that detects lassos…

Analyzes properties of lassos. PyLasso is a a PyMOL plugin that detects lassos in any biological, physical and mathematical systems, and provides various geometric characteristics thereof. The…

pKNOT
Web

pKNOT

Provides a structural database of knotted proteins, analysis tools for…

Provides a structural database of knotted proteins, analysis tools for detecting and analyzing knotted regions from structures as well as a Java-based 3D graphics viewer for visualizing knotted…

Protein knot…
Web

Protein knot server

A web server that detects knots in protein structures. The user submits a PDB…

A web server that detects knots in protein structures. The user submits a PDB id or uploads a 3D protein structure in PDB or mmCIF format. The current implementation of the server uses the Alexander…

Rknots
Desktop

Rknots

A flexible R package providing tools for the detection and characterization of…

A flexible R package providing tools for the detection and characterization of topological knots in biological polymers. The package is well documented and provides a simple syntax for data import…

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