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Protein knot server

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A web server that detects knots in protein structures. The user submits a PDB id or uploads a 3D protein structure in PDB or mmCIF format. The current implementation of the server uses the Alexander polynomial to detect knots. The results of the analysis that are presented to the user are the location of the knot in the structure, the type of the knot and an interactive visualization of the knot. The results can also be downloaded and viewed offline. The server also maintains a regularly updated list of known knots in protein structures.

Protein knot server specifications

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Information

Unique identifier	OMICS_06178
Name	Protein knot server
Interface	Web user interface
Restrictions to use	None
Computer skills	Basic
Stability	Stable
Maintained	Yes

Publication for Protein knot server

Protein knot server: detection of knots in protein structures.

2007 Nucleic Acids Res

PMCID: 1933242

PMID: 17517776

DOI: 10.1093/nar/gkm312

Protein knot server institution(s)

Harvard-MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA

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