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Protein subcellular localization prediction software tools | Sequence analysis

The function of a protein is generally related to its subcellular localization. Therefore, knowing its subcellular localization is helpful in understanding its potential functions and roles in biological processes.Source text:(Chang et al., 2013)…
pRoloc
Desktop

pRoloc

Executes pattern recognition techniques on quantitative mass spectrometry (MS)…

Executes pattern recognition techniques on quantitative mass spectrometry (MS) data in order to infer protein sub-cellular localisation. PRoloc includes an integration of heterogeneous data sources,…

MetaMass
Desktop

MetaMass

A tool for the analysis of subcellular proteomics data, based on the use of…

A tool for the analysis of subcellular proteomics data, based on the use of standardized lists of subcellular markers. MetaMass analyzed data from 11 studies using MetaMass, mapping the subcellular…

TargetP
Web

TargetP

Predicts the subcellular location of eukaryotic proteins. The location…

Predicts the subcellular location of eukaryotic proteins. The location assignment is based on the predicted presence of any of the N-terminal presequences: chloroplast transit peptide (cTP),…

PSORT
Web

PSORT

A computer program for the prediction of protein localization sites in cells.

A computer program for the prediction of protein localization sites in cells.

WoLF PSORT
Web

WoLF PSORT

An extension of the PSORT II program for protein subcellular location…

An extension of the PSORT II program for protein subcellular location prediction. WoLF PSORT converts protein amino acid sequences into numerical localization features; based on sorting signals,…

Cell-PLoc
Web

Cell-PLoc

A package of web-servers for predicting subcellular localization of proteins in…

A package of web-servers for predicting subcellular localization of proteins in different organisms.

PredictNLS
Desktop
Web

PredictNLS

An automated tool for the analysis and determination of Nuclear Localization…

An automated tool for the analysis and determination of Nuclear Localization Signals (NLS). PredictNLS predicts that your protein is nuclear or finds out whether your potential NLS is found in our…

MitoFates
Web
Desktop

MitoFates

Allows mitochondrial pre-sequence and cleavage site prediction. MitoFates is a…

Allows mitochondrial pre-sequence and cleavage site prediction. MitoFates is a prediction method that formulates pre-sequence prediction as a binary classification problem, employing a standard…

YLoc
Web

YLoc

An interpretable web server for predicting subcellular localization. A single…

An interpretable web server for predicting subcellular localization. A single sequence can be either raw or in FASTA format, whereas multiple sequences need to be in FASTA format. As an alternative,…

FUEL-mLoc
Web
PA-SUB
Web
BaCelLo
Web

BaCelLo

Predicts five classes of subcellular localization of proteins in eukaryotes:…

Predicts five classes of subcellular localization of proteins in eukaryotes: secretory pathway, cytoplasm, nucleus, mitochondrion and chloroplast. BaCelLo is a method for subcellular localization…

CELLO
Web

CELLO

An approach based on a two-level support vector machine (SVM) system: the first…

An approach based on a two-level support vector machine (SVM) system: the first level comprises a number of SVM classifiers, each based on a specific type of feature vectors derived from sequences;…

pLoc-mAnimal
Web

pLoc-mAnimal

Provides a multi-label predictor that can improve the prediction quality for…

Provides a multi-label predictor that can improve the prediction quality for the subcellular localization of animal proteins. pLoc-mAnimal can deal with the multiple locations of animal proteins. It…

MSLVP
Web

MSLVP Multiple Subcellular Localization of Viral Proteins

Predicts the subcellular location (SCL) of multiplex viral proteins. MSLVP is…

Predicts the subcellular location (SCL) of multiplex viral proteins. MSLVP is based on a support vector machine (SVM) method that employs new data set of experimentally verified sequences. It was…

HSLPred
Web

HSLPred

VM-based method for subcellular localization of human proteins using amino acid…

VM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search.

Euk-mPLoc
Web

Euk-mPLoc

Predicting subcellular localization of eukaryotic proteins including those with…

Predicting subcellular localization of eukaryotic proteins including those with multiple sites. It is freely accessible to the public as a Web server.

MultiLoc
Web

MultiLoc

Integrating phylogeny and Gene Ontology terms improves subcellular protein…

Integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction.

LOCALIZER
Web
Desktop

LOCALIZER

A machine learning method for subcellular localization prediction in plant…

A machine learning method for subcellular localization prediction in plant cells. LOCALIZER has been trained to predict either the localization of plant proteins or the localization of eukaryotic…

SChloro
Web

SChloro

Predicts protein sub-chloroplastic localization, based on targeting signal…

Predicts protein sub-chloroplastic localization, based on targeting signal detection and membrane protein information. SChloro is based on the recognition of sequence signals that define target…

CorrASemiB
Desktop

CorrASemiB

A protein subcellular localization prediction pipeline aiming to deal with the…

A protein subcellular localization prediction pipeline aiming to deal with the small sample size learning and multi-location proteins annotation problems. Five semi-supervised algorithms that can…

MDLoc
Web

MDLoc

A probabilistic generative model for protein localization. MDLoc takes…

A probabilistic generative model for protein localization. MDLoc takes advantage of the location inter-dependencies and location-feature dependency to provide a generalizable method for predicting…

TPpred
Web

TPpred

A computational method that given any Eukaryotic protein sequence performs…

A computational method that given any Eukaryotic protein sequence performs three different tasks: i) the detection of targeting peptides; ii) their classification as mitochondrial or chloroplastic,…

iLoc-Plant
Web

iLoc-Plant

Predicting subcellular localization of plant proteins with single and multiple…

Predicting subcellular localization of plant proteins with single and multiple sites. It may become a useful bioinformatics tool for Molecular Cell Biology, Proteomics, Systems Biology, and Drug…

HECTAR
Web

HECTAR HEterokont subCellular TARgeting

Predicts the subcellular localisation of heterokont proteins with high…

Predicts the subcellular localisation of heterokont proteins with high accuracy. HECTAR is a statistical prediction method designed to assign proteins to five different categories of subcellular…

iLoc-Animal
Web

iLoc-Animal

Predicting subcellular localization of animal proteins with single or multiple…

Predicting subcellular localization of animal proteins with single or multiple sites. As a user-friendly web-server, iLoc-Animal is freely accessible to the public at the web-site.

WegoLoc
Web

WegoLoc

Predicts protein subcellular localizations of animal, fungal, plant, and human…

Predicts protein subcellular localizations of animal, fungal, plant, and human proteins based on sequence similarity and gene ontology information.

PredAlgo
Web

PredAlgo

Organelle-specific proteomic studies have started to delineate its various…

Organelle-specific proteomic studies have started to delineate its various subproteomes, but sequence-based prediction software is necessary to assign proteins subcellular localizations at whole…

cNLS Mapper
Web

cNLS Mapper

A computer program for prediction of the classical importin-alpha/beta…

A computer program for prediction of the classical importin-alpha/beta pathway-specific nuclear localization signals (NLSs). cNLS Mapper calculates NLS activities by using these profiles and an…

Nuc-Ploc
Web

Nuc-Ploc

Identifies the sub-nuclear locations of numerous nuclear protein sequences.…

Identifies the sub-nuclear locations of numerous nuclear protein sequences. Nuc-Ploc is able to differentiate chromatin, heterochromatin, nuclear envelope, nuclear matrix, nuclear pore complex,…

ClubSub-P
Web

ClubSub-P

An online database that combines existing SCL prediction tools into a consensus…

An online database that combines existing SCL prediction tools into a consensus pipeline from more than 600 proteomes of fully sequenced microorganisms. On top of the consensus prediction at the…

AtSubP
Web

AtSubP Arabidopsis Subcellular localization Predictor

Localizes gene products at the subcellular level will substantially advance…

Localizes gene products at the subcellular level will substantially advance Arabidopsis gene annotation. AtSubP is based on the combinatorial presence of diverse protein features, such as its amino…

SECRETOOL
Web

SECRETOOL

The secretome (full set of secreted proteins) has been studied in multiple…

The secretome (full set of secreted proteins) has been studied in multiple fungal genomes to elucidate the potential role of those protein collections involved in a number of metabolic processes from…

DeepLoc
Web

DeepLoc

Predicts the subcellular localization of eukaryotic proteins. DeepLoc is a well…

Predicts the subcellular localization of eukaryotic proteins. DeepLoc is a well assembled protein collection with reliable subcellular localization information. This online resource can differentiate…

SubCons
Web

SubCons

Outperforms earlier methods in a dataset of proteins where two independent…

Outperforms earlier methods in a dataset of proteins where two independent methods confirm the subcellular localization. SubCons is an ensemble method that combines four predictors using a Random…

CYCLoPs
Dataset

CYCLoPs Collection of Yeast Cells Localization Patterns

Provides a central platform for housing and analyzing our yeast proteome…

Provides a central platform for housing and analyzing our yeast proteome dynamics datasets at the single cell level. CYCLoPs differs from existing databases in a number of ways: (1) whereas other…

SubPhos
Web

SubPhos

An account of the emerging field of subcellular phosphoproteomics where a…

An account of the emerging field of subcellular phosphoproteomics where a support vector machine (SVM) approach was combined with a novel algorithm of discrete wavelet transform (DWT) to facilitate…

mGOASVM
Web

mGOASVM

Multi-Label Protein Subcellular Localization Prediction. The mGOASVM predictor…

Multi-Label Protein Subcellular Localization Prediction. The mGOASVM predictor has the following advantages: (1) it uses the frequency of occurrences of GO terms for feature representation; (2) it…

SpaPredictor
Web

SpaPredictor

Two sparse and interpretable multi-label predictors, namely mLASSO and mEN for…

Two sparse and interpretable multi-label predictors, namely mLASSO and mEN for large-scale predictions of both single- and multi-location proteins. Given a query protein, its feature vector is…

PCLR
Web

PCLR

A method of predicting chloroplast localization of proteins in plant cells. The…

A method of predicting chloroplast localization of proteins in plant cells. The prediction algorithm was trained using principal component logistic regression with stepwise variable selection.

ESLpred
Web

ESLpred

A SVM based methods for predicting the subcellular localization of the…

A SVM based methods for predicting the subcellular localization of the eukaryotic proteins using various features of proteins. The three features i) physicochemical properties, amino acid compostion,…

Hum-mPLoc
Web
Desktop

Hum-mPLoc

Predicts the amino acid sequence-based human protein subcellular location to…

Predicts the amino acid sequence-based human protein subcellular location to cover human subcellular localizations. The sequences are represented by multi-view complementary features, i.e., context…

SUBAcon
Desktop

SUBAcon SUBcellular Arabidopsis consensus

A useful tool for recovering proteome-wide subcellular locations of Arabidopsis…

A useful tool for recovering proteome-wide subcellular locations of Arabidopsis proteins and is displayed in the SUBA3 database.

MetaLocGramN
Web

MetaLocGramN

A method for subcellular localization prediction of Gram-negative proteins. The…

A method for subcellular localization prediction of Gram-negative proteins. The MetaLocGramN is a gateway to a number of primary prediction methods (various types: signal peptide, beta-barrel,…

mPLR-Loc
Web

mPLR-Loc

A multi-label predictor based on penalized logistic regression and adaptive…

A multi-label predictor based on penalized logistic regression and adaptive decisions for predicting both single- and multi-location proteins. Specifically, for each query protein, mPLR-Loc exploits…

mLASSO-Hum
Web

mLASSO-Hum

An interpretable multi-label predictor which can yield sparse and interpretable…

An interpretable multi-label predictor which can yield sparse and interpretable solutions for large-scale prediction of human protein subcellular localization. By using the one-vs-rest LASSO-based…

ngLOC
Desktop
Web

ngLOC

An n-gram-based Bayesian classifier that predicts subcellular localization of…

An n-gram-based Bayesian classifier that predicts subcellular localization of proteins both in prokaryotes and eukaryotes.

HybridGO-Loc
Web

HybridGO-Loc

A multi-label subcellular-localization predictor that leverages not only the GO…

A multi-label subcellular-localization predictor that leverages not only the GO term occurrences but also the inter-term relationships. This is achieved by hybridizing the GO frequencies of…

CELLO2GO
Web

CELLO2GO

A publicly available, web-based system for screening various properties of a…

A publicly available, web-based system for screening various properties of a targeted protein and its subcellular localization.

NucImport
Desktop

NucImport

A protein sequence and interaction prediction service designed to determine the…

A protein sequence and interaction prediction service designed to determine the nuclear transport of proteins in mouse and yeast. NucImport uses Bayesian networks, recognizes NLSs, links interactions…

PProwler
Web

PProwler Protein Prowler Subcellular Localisation Predictor

Accepts amino acid sequences, presented in the FASTA format, and determines the…

Accepts amino acid sequences, presented in the FASTA format, and determines the localisation of the protein among the following categories: secretory pathway, mitochondrion, chloroplast, other…

PSLpred
Desktop
Web

PSLpred

A web server for predicting subcellular localization of gram-negative bacterial…

A web server for predicting subcellular localization of gram-negative bacterial proteins with an overall accuracy of 91.2%. PSLpred is a hybrid approach-based method that integrates PSI-BLAST and…

LocTree
Web

LocTree

A framework to predict localization in life's three domains, including…

A framework to predict localization in life's three domains, including globular and membrane proteins.

R3P-Loc
Web

R3P-Loc

Uses two compact databases for feature extraction and applies random projection…

Uses two compact databases for feature extraction and applies random projection (RP) to reduce the feature dimensions of an ensemble ridge regression (RR) classifier. Two new compact databases are…

RSLpred
Desktop
Web

RSLpred

To assist the plant research community, RSLpred has been developed for…

To assist the plant research community, RSLpred has been developed for subcellular prediction of query rice proteins. RSLpred is a SVM based prediction method for 4 major target proteins…

Predotar
Web

Predotar

A neural network-based approach for identifying genes encoding these proteins…

A neural network-based approach for identifying genes encoding these proteins amongst eukaryotic genome sequences.

SeqNLS
Web

SeqNLS

A sequential pattern mining algorithm. SeqNLS identifies potential nuclear…

A sequential pattern mining algorithm. SeqNLS identifies potential nuclear localization signals (NLSs) patterns without being constrained by the limitation of current knowledge of NLSs. The extracted…

PSI-predictor
Web

PSI-predictor Plant Subcellular localization integrative predictor

A comprehensive and integrative subcellular location predictor for plants.…

A comprehensive and integrative subcellular location predictor for plants. Based on the wisdom of group-voting and artificial neural network, PSI integrated prediction results from 11 individual…

iLoc-Euk
Web

iLoc-Euk

Predicting subcellular localization of eukaryotic proteins with single and…

Predicting subcellular localization of eukaryotic proteins with single and multiple sites.

Plant-mPLoc
Web

Plant-mPLoc

Predicting subcellular localization of plant proteins including those with…

Predicting subcellular localization of plant proteins including those with multiple sites.

ChloroP
Web

ChloroP

A neural network based method for identifying chloroplast transit peptides and…

A neural network based method for identifying chloroplast transit peptides and their cleavage sites. ChloroP method should be useful for the identification of putative transit peptides in genome-wide…

SLP-Local
Web

SLP-Local

Predicts the subcellular location of proteins just from their amino acid…

Predicts the subcellular location of proteins just from their amino acid sequence. Subcellular locations to be predicted are chloroplast, mitochondria, secretory pathway, and other locations (nucleus…

DualPred
Web

DualPred

Designed to predict the plant dual-targeted proteins (chloroplast and…

Designed to predict the plant dual-targeted proteins (chloroplast and mitochondria) using novel splitprotein-relatedness-measure feature and AdaBoost-J48 as a classifier.

SCLAP
Web

SCLAP

The server can be used to predict the subchloroplast localization of…

The server can be used to predict the subchloroplast localization of chloroplast proteins.

NLStradamus
Web
Desktop

NLStradamus

A simple Hidden Markov Model for nuclear localization signal prediction.…

A simple Hidden Markov Model for nuclear localization signal prediction. NLStradamus predicts nuclear localization signals (NLSs) in nuclear proteins that are transported by the import machinery of…

ProLoc-GO
Web

ProLoc-GO

Proposes an efficient sequence-based method by mining informative GO terms for…

Proposes an efficient sequence-based method by mining informative GO terms for predicting protein subcellular localization. To predict subcellular localizations for novel proteins, ProLoc-GO uses a…

SubMito
Desktop
Web

SubMito

Knowing the submitochondria localization of a mitochondria protein is an…

Knowing the submitochondria localization of a mitochondria protein is an important step to understand its function. SubMito is based on an extended version of pseudo-amino acid composition to predict…

TBpred
Desktop
Web

TBpred

A prediction server that predicts four subcellular localization (cytoplasmic,…

A prediction server that predicts four subcellular localization (cytoplasmic, integral membrane, secretory and membrane attached by lipid anchor) of mycobacterial proteins. It is SVM based method…

Virus-mPLoc
Web

Virus-mPLoc

Predicting the subcellular localization of viral proteins within host and…

Predicting the subcellular localization of viral proteins within host and virus-infected cells.

GOASVM
Web

GOASVM

A GO-based method to predict subcellular locations of proteins. The accession…

A GO-based method to predict subcellular locations of proteins. The accession numbers (ACs) of query proteins are used as keys to search against the GOA database to find the GO terms. For proteins…

SubChlo
Web

SubChlo

A method for predicting the protein subchloroplast locations. This is the first…

A method for predicting the protein subchloroplast locations. This is the first algorithm for predicting the protein subchloroplast locations. This service may be useful to the chloroplast proteome…

Gneg-mPLoc
Web

Gneg-mPLoc

It was developed for identifying the subcellular localization of Gram negative…

It was developed for identifying the subcellular localization of Gram negative bacterial proteins by fusing the information of gene ontology, as well as the functional domain information and…

SCLpredT
Web

SCLpredT

A predictor of protein subcellular localization, based on a machine learning…

A predictor of protein subcellular localization, based on a machine learning model (N-to-1 Neural Networks). This system, in three versions specialised, respectively, on plants, fungi and animals,…

APSLAP
Web
MITOPROT
Web

MITOPROT

Calculates the N-terminal protein region that can support a mitochondrial…

Calculates the N-terminal protein region that can support a mitochondrial targeting sequence and the cleavage site. MitoProt supplies a series of parameters that permit theoretical evaluation of…

iLoc-Gneg
Web

iLoc-Gneg

Predicts subcellular localization of Gram-negative bacterial proteins with…

Predicts subcellular localization of Gram-negative bacterial proteins with single and multiple sites. iLoc-Gneg can deal with singleplex and multiplex human proteins among 8 subcellular location…

iLoc-Hum
Web

iLoc-Hum

Predicts subcellular localization of human proteins with single and multiple…

Predicts subcellular localization of human proteins with single and multiple sites. iLoc-Hum can deal with singleplex and multiplex human proteins among 14 subcellular location sites: centrosome,…

iLoc-Virus
Web

iLoc-Virus

Identifies the subcellular locations of viral proteins with single and multiple…

Identifies the subcellular locations of viral proteins with single and multiple sites. iLoc-Virus is a predictor which can deal with singleplex and multiplex viral proteins among six subcellular…

PairProSVM
Desktop

PairProSVM

Automatically predicts the subcellular locations of proteins. The profiles of…

Automatically predicts the subcellular locations of proteins. The profiles of all protein sequences in the training set are constructed by PSI-BLAST and the pairwise profile-alignment scores are used…

EuLoc
Web

EuLoc

A hybrid method for prediction of eukaryotic protein subcellular localization.…

A hybrid method for prediction of eukaryotic protein subcellular localization. EuLoc incorporates the hidden Markov model (HMM) method, homology search approach and the support vector machines (SVM)…

Gpos-mPLoc
Web

Gpos-mPLoc

It was developed for identifying the subcellular localization of Gram positive…

It was developed for identifying the subcellular localization of Gram positive bacterial proteins by fusing the information of gene ontology, as well as the functional domain information and…

PredSL
Web

PredSL

An algorithm that exploits neural networks, Markov Chains, and HMMs for the…

An algorithm that exploits neural networks, Markov Chains, and HMMs for the prediction of the subcellular localization of proteins in eukaryotic cells from the N-terminal amino acid sequence.

EpiLoc
Web

EpiLoc

A comprehensive text-based localization system. They provide an in-depth study…

A comprehensive text-based localization system. They provide an in-depth study of text-feature selection, and study several new ways to associate text with proteins, so that text-based location…

iLoc-Gpos
Web

iLoc-Gpos

Predicting subcellular localization of Gram-positive bacterial proteins with…

Predicting subcellular localization of Gram-positive bacterial proteins with single and multiple sites.

MPSP
Desktop

MPSP

A parallel framework for fusing multiple membrane protein multi-view attributes…

A parallel framework for fusing multiple membrane protein multi-view attributes that will represent protein samples in complex spaces.

ProtrWeb
Web
Desktop

ProtrWeb

Calculates various commonly used structural and physicochemical descriptors and…

Calculates various commonly used structural and physicochemical descriptors and proteochemometrics modeling descriptors for amino acid sequences. Users can select appropriate descriptors calculated…

PlantLoc
Web

PlantLoc

An accurate web server for predicting plant protein subcellular localization by…

An accurate web server for predicting plant protein subcellular localization by substantiality motif. The PlantLoc service is freely available, open to all users and there is no login requirement.

ApoplastP
Desktop

ApoplastP

Predicts if a protein is localized to the plant apoplast. ApoplastP is a…

Predicts if a protein is localized to the plant apoplast. ApoplastP is a data-driven machine learning approach. It outperforms the common approach of selecting apoplastic effectors from secretomes…

MultiP-Apo
Web

MultiP-Apo Multilocation Prediction APOptosis proteins

Predicts apoptosis proteins with single subcellular location and those with…

Predicts apoptosis proteins with single subcellular location and those with multiple subcellular locations. MultiP-Apo is a multilabel predictor. The prediction results can be easily obtained for the…

MITOPRED
Web

MITOPRED

Enables prediction of nucleus-encoded mitochondrial proteins in all eukaryotic…

Enables prediction of nucleus-encoded mitochondrial proteins in all eukaryotic species. Predictions are made using an algorithm based primarily on Pfam domain occurrence patterns in mitochondrial and…

MultiP-SChlo
Web

MultiP-SChlo

Identifying protein subchloroplast localization in chloroplast organelle is…

Identifying protein subchloroplast localization in chloroplast organelle is very helpful for understanding the function of chloroplast proteins. MultiP-SChlo is a multi-label classifier developed for…

KnowPredsite
Web

KnowPredsite

A knowledge based method to predict the localization site(s) of both…

A knowledge based method to predict the localization site(s) of both single-localized and multi-localized proteins. KnowPred site demonstrates the power of identifying related sequences in the…

TetraMito
Desktop

TetraMito

Identifies submitochondria location of proteins based on the sequence…

Identifies submitochondria location of proteins based on the sequence information. TetraMito is a web server that can become a useful vehicle for in-depth studying mitochondria proteins, or at least…

MycoSub
Web

MycoSub

Mycobacterium tuberculosis is a bacterium that causes tuberculosis, one of the…

Mycobacterium tuberculosis is a bacterium that causes tuberculosis, one of the most prevalent infectious diseases. MycoSub is a sequence-based predictor for identifying subcellular localization of…

Gneg-ECC-mPLoc
Web

Gneg-ECC-mPLoc

Predicts the subcellular locations of multi-label gram-negative bacterial…

Predicts the subcellular locations of multi-label gram-negative bacterial proteins. Gneg-ECC-mPLoc extracts Gene Ontology (GO) feature vectors from GO terms of homologs of query proteins and then…

Gpos-ECC-mPLoc
Web

Gpos-ECC-mPLoc

Predicts the subcellular locations of multi-label gram-positive bacterial…

Predicts the subcellular locations of multi-label gram-positive bacterial proteins respectively. Gpos-ECC-mPLoc constructs the Gene Ontology (GO) vectors by using the GO terms of homologous proteins…

NYCE
Web

NYCE

This tool predicts subcellular location (either Nuclear, Nucleo-cytoplasmic,…

This tool predicts subcellular location (either Nuclear, Nucleo-cytoplasmic, Cytoplasmic or Extracellular) of eukaryotic proteins using the predicted exposure value of their amino acids.

SubNucPred
Desktop
Web

SubNucPred

A combined method of two different prediction approaches which predicts 10…

A combined method of two different prediction approaches which predicts 10 different sub-nuclear locations namely: centromere, chromosome, nucleolus, nuclear envelope, nuclear speckles, telomere,…

Hum-PLoc
Web

Hum-PLoc

Provides an ensemble classifier which was developed by fusing basic individual…

Provides an ensemble classifier which was developed by fusing basic individual classifiers through a voting system. Hum-PLoc tests were performed for human proteins among the following 12 locations:…

SubLoc
Web
Desktop

SubLoc

A server/client suite for protein subcellular location based on SOAP (Simple…

A server/client suite for protein subcellular location based on SOAP (Simple Object Access Protocol) technology. SubLoc facilitates automated information retrieval in adapting the SOAP technology to…

MSLoc-DT
Web

MSLoc-DT

Predicts the protein subcellular locations of human, animal, plant, bacteria,…

Predicts the protein subcellular locations of human, animal, plant, bacteria, virus, fungi, and archaea by introducing a novel feature extraction approach termed amino acid index distribution (AAID)…

Mito-GSAAC
Web

Mito-GSAAC

Proposes a system for prediction of mitochondrial proteins. Mito-GSAAC aims at…

Proposes a system for prediction of mitochondrial proteins. Mito-GSAAC aims at predicting eukaryotic mitochondrial proteins using split amino acid composition (SAAC) and an ensemble classifier using…

PROlocalizer
Web

PROlocalizer

Integrates 11 individual methods to predict altogether 12 localizations for…

Integrates 11 individual methods to predict altogether 12 localizations for animal proteins. PROlocalizer is implemented in a user-friendly, automated service. The user can submit at a time, a number…

TESTLoc
Desktop

TESTLoc

Predicts the subcellular localization of proteins based on their partial…

Predicts the subcellular localization of proteins based on their partial sequence conceptually translated from ESTs (EST-peptides). Support vector machine (SVM) is used as computational method and…

ChloPred
Web

ChloPred

Identifies subchloroplast location of proteins based on the primary sequence…

Identifies subchloroplast location of proteins based on the primary sequence information. ChloPred is a support vector machine (SVM)-based method to predict the locations of chloroplast proteins.…

subGolgi
Web

subGolgi

Identifies Golgi-resident proteins and their types based on the sequence…

Identifies Golgi-resident proteins and their types based on the sequence information. subGolgi could be useful to discriminate between cis-Golgi and trans-Golgi proteins in the absence of…

BS-KNN
Desktop

BS-KNN Bit-Score weighted K-Nearest Neighbor

Predicts proteins’ subchloroplast locations. BS-KNN makes predictions based…

Predicts proteins’ subchloroplast locations. BS-KNN makes predictions based on a bit-score weighted Euclidean distance (BS-WED) computed from residue composition. For each subchloroplast location,…

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