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Protein-peptide docking software tools | Drug discovery

Protein–peptide interactions are involved in a wide range of biological processes and are attractive targets for therapeutic purposes because of their small interfaces. Therefore, effective protein–peptide docking techniques can provide…
CABS-dock
Web

CABS-dock

Performs docking search for the binding site allowing for full flexibility of…

Performs docking search for the binding site allowing for full flexibility of the peptide and small fluctuations of the receptor backbone. CABS-dock employs an efficient peptide docking scheme. It…

GalaxyPepDock
Web

GalaxyPepDock

Performs similarity-based docking by finding templates from the database of…

Performs similarity-based docking by finding templates from the database of experimentally determined structures and building models using energy-based optimization that allows for structural…

PIPER-FlexPepDo…
Web

PIPER-FlexPepDock

Offers a global peptide-protein docking protocol. PIPER-FlexPepDock brings into…

Offers a global peptide-protein docking protocol. PIPER-FlexPepDock brings into reach the study and targeted manipulation of a range of additional peptide-mediated interactions not accessible before…

FlexPepDock
Web

FlexPepDock

A high-resolution peptide docking (refinement) protocol, implemented within the…

A high-resolution peptide docking (refinement) protocol, implemented within the Rosetta framework.

PepCrawler
Web

PepCrawler

A tool for deriving binding peptides from protein-protein complexes and…

A tool for deriving binding peptides from protein-protein complexes and prediction of peptide-protein complexes, by performing high-resolution docking refinement and estimation of binding affinity.

LEADS-PEP
Dataset

LEADS-PEP

Assess peptide docking performance. LEADS-PEP contains 53 protein−peptide…

Assess peptide docking performance. LEADS-PEP contains 53 protein−peptide complexes with peptide lengths ranging from 3 to 12 residues. It is representative of the Lessons for Efficiency Assessment…

pepATTRACT
Desktop
Web

pepATTRACT

Generates a fully blind peptide-protein docking protocol for usage with the…

Generates a fully blind peptide-protein docking protocol for usage with the ATTRACT program. The ATTRACT Easy web interface provides a convenient way to set up an ab-initio two-body protein-protein…

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