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Protein-peptide docking software tools | Drug discovery

Protein–peptide interactions are involved in a wide range of biological processes and are attractive targets for therapeutic purposes because of their small interfaces. Therefore, effective protein–peptide docking techniques can provide…
LEADS-PEP
Dataset

LEADS-PEP

Assess peptide docking performance. LEADS-PEP contains 53 protein−peptide…

Assess peptide docking performance. LEADS-PEP contains 53 protein−peptide complexes with peptide lengths ranging from 3 to 12 residues. It is representative of the Lessons for Efficiency Assessment…

GalaxyPepDock
Web

GalaxyPepDock

Performs similarity-based docking by finding templates from the database of…

Performs similarity-based docking by finding templates from the database of experimentally determined structures and building models using energy-based optimization that allows for structural…

CABS-dock
Web

CABS-dock

Given a protein receptor structure and a peptide sequence, CABS-dock performs…

Given a protein receptor structure and a peptide sequence, CABS-dock performs docking search for the binding site allowing for full flexibility of the peptide and small fluctuations of the receptor…

FlexPepDock
Web

FlexPepDock

A high-resolution peptide docking (refinement) protocol, implemented within the…

A high-resolution peptide docking (refinement) protocol, implemented within the Rosetta framework.

PepCrawler
Web

PepCrawler

A tool for deriving binding peptides from protein-protein complexes and…

A tool for deriving binding peptides from protein-protein complexes and prediction of peptide-protein complexes, by performing high-resolution docking refinement and estimation of binding affinity.

pepATTRACT
Desktop
Web

pepATTRACT

Generates a fully blind peptide-protein docking protocol for usage with the…

Generates a fully blind peptide-protein docking protocol for usage with the ATTRACT program. The ATTRACT Easy web interface provides a convenient way to set up an ab-initio two-body protein-protein…

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