Protein Prospector specifications

Information


Unique identifier OMICS_12420
Name Protein Prospector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format wml
Output format Qstar
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainers


  • person_outline Robert J. Chalkley <>
  • person_outline ProteinProspector Team <>

Additional information


http://prospector.ucsf.edu/prospector/html/instruct/allman.htm

Information


Unique identifier OMICS_12420
Name Protein Prospector
Interface Web user interface
Restrictions to use None
Input format xml
Output format Qstar
Computer skills Basic
Version 5.20.0
Stability Stable
Registration required Yes
Maintained Yes

Documentation


Maintainers


  • person_outline Robert J. Chalkley <>
  • person_outline ProteinProspector Team <>

Additional information


http://prospector.ucsf.edu/prospector/html/instruct/allman.htm

Protein Prospector articles

Protein Prospector citations

 (3)
2017
PMCID: 5383782

[…] identifier pxd004195. phosphopeptide data retaining the highest scoring peptide for any given peptide, modification, and precursor charge combination can be viewed using ms-viewer (22), part of the protein prospector web package, using search key g2tzikzhsk., acquired mass spectra from heavy-labeled samples were first processed using mascot distiller version 2.3.2 (matrix science ltd.; london, […]

2016
PMCID: 4976990

[…] precursors, and in the second run, it was operated in targeted mode (tms2 mode). the list of precursors derived from the possible ubc9_ttr peptides with a glygly-tagged lysine was generated by the proteinprospector tool (http://prospector.ucsf.edu/prospector/mshome.htm). the ms/ms spectra were acquired in the orbitrap mass analyser with a resolution of 35,000 at m/z 200 with an isolation […]

2015
PMCID: 4326178

[…] using scaffold (proteome software inc., portland, or) with the addition of searching with x!tandem on the scaffold software. manual validation of parent ions was aided by the online program protein prospector (ms-product feature) to produce lists of daughter ions for select peptides and modified peptides. cysteine containing peptides were searched for as non-modified peptides, […]

Protein Prospector institution(s)
Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, USA; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA
Protein Prospector funding source(s)
Supported by the Biomedical Technology Research Centers program of the NIGMS, National Institutes of Health (8P41GM103481).

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