Protein Prospector pipeline

Protein Prospector specifications

Information


Unique identifier OMICS_12420
Name Protein Prospector
Alternative name ProteinProspector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format wml
Output format Qstar
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainers


  • person_outline Robert J. Chalkley <>
  • person_outline ProteinProspector Team <>

Additional information


http://prospector.ucsf.edu/prospector/html/instruct/allman.htm

Information


Unique identifier OMICS_12420
Name Protein Prospector
Alternative name ProteinProspector
Interface Web user interface
Restrictions to use None
Input format xml
Output format Qstar
Computer skills Basic
Version 5.20.0
Stability Stable
Registration required Yes
Maintained Yes

Documentation


Maintainers


  • person_outline Robert J. Chalkley <>
  • person_outline ProteinProspector Team <>

Additional information


http://prospector.ucsf.edu/prospector/html/instruct/allman.htm

Publications for Protein Prospector

Protein Prospector citations

 (2)
2017
PMCID: 5383782

[…] identifier pxd004195. phosphopeptide data retaining the highest scoring peptide for any given peptide, modification, and precursor charge combination can be viewed using ms-viewer (22), part of the protein prospector web package, using search key g2tzikzhsk., acquired mass spectra from heavy-labeled samples were first processed using mascot distiller version 2.3.2 (matrix science ltd.; london, […]

2016
PMCID: 4976990

[…] precursors, and in the second run, it was operated in targeted mode (tms2 mode). the list of precursors derived from the possible ubc9_ttr peptides with a glygly-tagged lysine was generated by the proteinprospector tool (http://prospector.ucsf.edu/prospector/mshome.htm). the ms/ms spectra were acquired in the orbitrap mass analyser with a resolution of 35,000 at m/z 200 with an isolation […]

Protein Prospector institution(s)
Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, USA; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA
Protein Prospector funding source(s)
Supported by the Biomedical Technology Research Centers program of the NIGMS, National Institutes of Health (8P41GM103481).

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