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Protein-protein structure detection software tools

Scipion Web…
Desktop
Web

Scipion Web Tools

A framework for obtaining 3D models of macromolecular complexes using Electron…

A framework for obtaining 3D models of macromolecular complexes using Electron Microscopy (3DEM). Scipion integrates several software packages and presents a unified interface for both biologists and…

COTH
Web

COTH CO-THreader

A multiple-chain protein threading algorithm which is designed to identify and…

A multiple-chain protein threading algorithm which is designed to identify and recombine protein complex structures from both tertiary and complex structure libraries. COTH first generates complex…

XLink-DB
Web

XLink-DB

Serves as a data storage site and visualization tool for cross-linking results.…

Serves as a data storage site and visualization tool for cross-linking results. XLink-DB accepts data generated with any cross-linker and stores them in a relational database. The method is a way to…

SPRING
Web

SPRING Single-chain-based prediction of interactions and geometries

A template-base algorithm for protein-protein structure prediction. It first…

A template-base algorithm for protein-protein structure prediction. It first threads one chain of the protein complex through the PDB library with the binding partners retrieved from the original…

Trypano-PPI
Web

Trypano-PPI

Predicts Unique PPIs in Trypanosome (TPPIs) from the 3D structure of proteins…

Predicts Unique PPIs in Trypanosome (TPPIs) from the 3D structure of proteins involved in protein-protein interactions (PPI). Trypano-PPI is implemented as a web-server. The software predicts how a…

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