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Sequence alignment visualization software tools | Protein comparison analysis

Viewing multiple sequence alignments (MSAs) is a fundamental requirement in the analysis of protein sequences, allowing us to visualize conservation across protein families as well as unusual features of particular sequences.Source text:(Martin,…
TnT
Desktop

TnT

A set of libraries aimed at creating powerful tree- and track-based…

A set of libraries aimed at creating powerful tree- and track-based visualisations for the web. Its modularity and rich API facilitate the development of many different visualisations ranging from…

ANTHEPROT
Desktop

ANTHEPROT

Allows protein sequence analysis. ANTHEPROT is able to interactively couple…

Allows protein sequence analysis. ANTHEPROT is able to interactively couple multiple alignments with secondary structure predictions. It can submit tasks on a remote server and retrieve data from a…

Jalview
Desktop

Jalview

A system for interactive WYSIWYG editing, analysis and annotation of multiple…

A system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and…

XSuLT
Web

XSuLT

Allows to annotate and format a multiple protein sequence alignment or single…

Allows to annotate and format a multiple protein sequence alignment or single structure. XSuLT is an enhanced version of JoY that introduces additional functionality such as interactions,…

MSAViewer
Web

MSAViewer

A quick and easy visualization and analysis JavaScript component for multiple…

A quick and easy visualization and analysis JavaScript component for multiple sequence alignment data of any size. Core features include interactive navigation through the alignment, application of…

Protael
Desktop

Protael

A JavaScript library for creating interactive visualizations of biological…

A JavaScript library for creating interactive visualizations of biological sequences and various associated data. Protael allows users to generate high-quality vector graphics (SVG) and integrate it…

Alignment-Annot…
Web

Alignment-Annotator

A web service designed to generate interactive views of annotated nucleotide…

A web service designed to generate interactive views of annotated nucleotide and amino acid sequence alignments (i) de novo and (ii) embedded in other software.

PeptideMapper
Desktop

PeptideMapper

Indexes and queries proteomes. PeptideMapper is a very efficient and versatile…

Indexes and queries proteomes. PeptideMapper is a very efficient and versatile approach. This method is particularly well-suited for challenging experimental setups involving large databases. It has…

MODalign
Web

MODalign

An interactive web-based tool aimed at helping protein structure modelers to…

An interactive web-based tool aimed at helping protein structure modelers to inspect and manually modify the alignment between the sequences of a target protein and of its template(s). MODalign…

JSAV
Web

JSAV JavaScript Sequence Alignment Viewer

A simple-to-use JavaScript component for displaying sequence alignments on web…

A simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of…

SnipViz
Desktop

SnipViz

A drop-in client-side module for web sites designed to efficiently visualize…

A drop-in client-side module for web sites designed to efficiently visualize and disseminate gene and protein sequences. SnipViz has a space-efficient, interactive, and dynamic interface for…

Sequence
Desktop

Sequence

A BioJS component for visualising sequences with a set of options supporting a…

A BioJS component for visualising sequences with a set of options supporting a flexible configuration of the visual representation, such as formats, colours, annotations, and columns, among others.…

prettyplot
Desktop

prettyplot

Draws a sequence alignment with pretty formatting. prettyplot draws a plot of…

Draws a sequence alignment with pretty formatting. prettyplot draws a plot of the input sequence alignment. The sequences are rendered in pretty formatting on the specified graphics device. The tool…

showalign
Desktop

showalign

Displays a multiple sequence alignment in pretty format. showalign reads a set…

Displays a multiple sequence alignment in pretty format. showalign reads a set of aligned protein or a nucleic acid sequences, and writes them to file (or screen) in a style suitable for publication.…

CLANS
Desktop

CLANS CLuster ANalysis of Sequences

Allows visualization of pairwise sequence similarities in 2D or 3D spaces.…

Allows visualization of pairwise sequence similarities in 2D or 3D spaces. CLANS is an application based on the Fruchterman–Reingold graph layout algorithm. The software performs all-against-all…

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