Protein sequence analysis software tools and databases

Protein sequence analysis steps

Most recent bioinformatics tools

PeptideMass
Web

PeptideMass

Allows users to utilize annotated protein sequence databases for the…

Allows users to utilize annotated protein sequence databases for the understanding of Mass Spectrometry (MS) data. PeptideMass generates the theoretical peptide masses of any protein in the…

GenPro
Desktop

GenPro

Allows users to build personalized protein databases (PPDs) using variant calls…

Allows users to build personalized protein databases (PPDs) using variant calls from next-generation genomic sequencing (NGS) data. GenPro was applied to the study of allelic-specific protein (ASP)…

AOD
Dataset

AOD AntiOxidant protein Database

Consists of a manually curated database of 710 experimentally validated…

Consists of a manually curated database of 710 experimentally validated antioxidant proteins. Information including taxonomy, source organism, subcellular location, gene ontology, catalytic activity…

Logol
Desktop

Logol

Permits users to find a pattern in a nucleic or proteic sequence. Logol uses a…

Permits users to find a pattern in a nucleic or proteic sequence. Logol uses a grammar language matching technique to proceed. The user can specify constraints such as position, size, or length. It…

Most popular analytical software and databases

footprintDB
Dataset

footprintDB

Integrates several open access repositories of curated cis-elements, DNA…

Integrates several open access repositories of curated cis-elements, DNA motifs, and TFs into a unique repository. footprintDB systematically annotates the binding interfaces of the TFs by exploiting…

PlantTFDB
Dataset

PlantTFDB Plant Transcription Factor Database

A database of functional and evolutionary study of plant transcription factors.…

A database of functional and evolutionary study of plant transcription factors. With the version 4.0, PlantTFDB offers 320 370 TFs from 165 species. Three types of annotation provide more directly…

PLACE
Dataset

PLACE

A database of nucleotide sequence motifs found in plant cis-acting regulatory…

A database of nucleotide sequence motifs found in plant cis-acting regulatory DNA elements. Motifs were extracted from previously published reports on genes in vascular plants. In addition to the…

POLYVIEW-MM
Web

POLYVIEW-MM

Integrates high-quality animation of molecular motion (MM) with structural and…

Integrates high-quality animation of molecular motion (MM) with structural and functional analysis of macromolecules.

Curators for Protein sequence analysis

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