Protein sequence analysis | Proteomics

Protein sequence analysis steps

Protein sequence analysis | Proteomics

Most Recent Tools

MagicMatch
Desktop

MagicMatch

Maps sequence identifiers across databases. MagicMatch uses the MD5 checksum…

Maps sequence identifiers across databases. MagicMatch uses the MD5 checksum algorithm for message integrity to generate sequence fingerprints and uses these fingerprints as hash strings to map…

Iep
Desktop

Iep

Calculates the isoelectric point of proteins. iep can plot the ionization curve…

Calculates the isoelectric point of proteins. iep can plot the ionization curve with respect to pH and write an output file of the data, where for each pH point the number of bound electrons and…

TRITON
Desktop

TRITON

Allows for protein mutant modeling and the docking ligand molecules into them.…

Allows for protein mutant modeling and the docking ligand molecules into them. TRITON can be used to investigate mechanisms of protein–ligand interactions and to assess the role of individual…

pEffect
Web

pEffect

Predicts type III effector proteins from protein sequence. pEffect combines…

Predicts type III effector proteins from protein sequence. pEffect combines sequence similarity-based inferences (PSI-BLAST) with de-novo predictions using machine learning techniques. It identifies…

Most Popular Tools

footprintDB
Data

footprintDB

Integrates several open access repositories of curated cis-elements, DNA…

Integrates several open access repositories of curated cis-elements, DNA motifs, and TFs into a unique repository. footprintDB systematically annotates the binding interfaces of the TFs by exploiting…

PlantTFDB
Data

PlantTFDB Plant Transcription Factor Database

A database of functional and evolutionary study of plant transcription factors.…

A database of functional and evolutionary study of plant transcription factors. With the version 4.0, PlantTFDB offers 320 370 TFs from 165 species. Three types of annotation provide more directly…

PLACE
Data

PLACE

A database of nucleotide sequence motifs found in plant cis-acting regulatory…

A database of nucleotide sequence motifs found in plant cis-acting regulatory DNA elements. Motifs were extracted from previously published reports on genes in vascular plants. In addition to the…

POLYVIEW-MM
Web

POLYVIEW-MM

Integrates high-quality animation of molecular motion (MM) with structural and…

Integrates high-quality animation of molecular motion (MM) with structural and functional analysis of macromolecules.

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