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Protein sequence analysis software tools and databases

Protein sequence analysis steps

Experts in Protein sequence analysis

They share and annotate bioinformatics tools

Most recent bioinformatics tools

DASS-GUI
Desktop
PlantSSP
Dataset

PlantSSP Plant Small Secretory Peptides Database

Compiles information about small secretory peptides (SSPs) censused in plants.…

Compiles information about small secretory peptides (SSPs) censused in plants. PlantSSP allows users to browse among a set extracted from more than 30 plants genomes by families or by sequence ID.…

Homol-MetReS
Web

Homol-MetReS Sequence Homology-based Metabolic Network Reconstruction Server

Permits simultaneous large-scale reannotation, functional integration, and…

Permits simultaneous large-scale reannotation, functional integration, and automatic comparisons of metabolic networks on a multiple full genome scale. Homol-MetReS is a web application that assists…

PoSSuMsearch
Desktop

PoSSuMsearch

Discovers position specific scoring matrices (PSSMs). PoSSuMsearch is a…

Discovers position specific scoring matrices (PSSMs). PoSSuMsearch is a non-heuristic algorithm that can generate PSSMs from aligned sequences. It employs enhanced suffix arrays, a data structure…

Most popular analytical software and databases

footprintDB
Dataset

footprintDB

Integrates several open access repositories of curated cis-elements, DNA…

Integrates several open access repositories of curated cis-elements, DNA motifs, and TFs into a unique repository. footprintDB systematically annotates the binding interfaces of the TFs by exploiting…

PlantTFDB
Dataset

PlantTFDB Plant Transcription Factor Database

A database of functional and evolutionary study of plant transcription factors.…

A database of functional and evolutionary study of plant transcription factors. With the version 4.0, PlantTFDB offers 320 370 TFs from 165 species. Three types of annotation provide more directly…

ProteINSIDE
Web

ProteINSIDE

Integrates complementary analyses to produce information about proteins in one…

Integrates complementary analyses to produce information about proteins in one online automated package. ProteINSIDE is able to extract information for a list of genes or proteins ID from myriad data…

PLACE
Dataset

PLACE

A database of nucleotide sequence motifs found in plant cis-acting regulatory…

A database of nucleotide sequence motifs found in plant cis-acting regulatory DNA elements. Motifs were extracted from previously published reports on genes in vascular plants. In addition to the…

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