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Protein similarity network generation software tools | Protein interaction data analysis

Protein similarity networks are graphical representations of sequence, structural and other similarities among proteins for which pairwise all-by-all similarity connections have been calculated. Mapping of biological and other information to network nodes or edges enables hypothesis creation about sequence-structure-function relationships across sets of related proteins.

Source text:
(Barber and Babbitt, 2012) Pythoscape: a framework for generation of large protein similarity networks. Bioinformatics.

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