Protein structure data analysis software tools
To exert their biological functions, proteins fold into one or more specific conformations, dictated by complex and reversible non-covalent interactions. Determining the structure of a protein can be achieved by technics such as crystallography, nuclear-magnetic resonance spectroscopy, and dual polarization interferometry, and has implication for their biological functions. Structure analysis tools help predict protein structure according to their amino-acid sequences.
Multiple structure alignment
65 tools
Sequence annotation visualization
14 tools
Quality assessment
37 tools
Crystallization prediction
36 tools
Structural domain prediction
15 tools
Functional site prediction
23 tools
Conformational transition modeling
18 tools
Protein-protein structure prediction
7 tools
Structure refinement
24 tools
Fold recognition
56 tools
Structure decoy generation
7 tools
Protein design
21 tools
Dihedral angle prediction
25 tools
Binding-site similarity detection
20 tools
Dynamic domain detection
4 tools
Structure manipulation
17 tools
Flexibility prediction
23 tools
Synthetic fusion protein design
2 tools
Structural motif detection
40 tools
Loop modeling
21 tools
Structure search
20 tools
Homo-oligomer structure prediction
5 tools
Cavity detection
11 tools
Tunnel detection
8 tools
Channel detection
21 tools
Protein-protein interface prediction
70 tools
Disulfide bonding prediction
14 tools
Protein structure comparison
22 tools
Domain movement prediction
6 tools
Dynamics prediction
77 tools
Circular permutation prediction
3 tools
Coiled-coil domain prediction
18 tools
Internal symmetry prediction
4 tools
Knot prediction
6 tools
Stability change prediction
49 tools
Contact map prediction
65 tools
Hot spot prediction
15 tools
Structure validation
18 tools
Disorder prediction
67 tools
Co-evolving residue prediction
29 tools
Allosteric site prediction
12 tools
Volume calculation
15 tools
Repetitive element prediction
12 tools
Structure conservation prediction
24 tools
Secondary structure prediction
79 tools
Tertiary structure prediction
158 tools
GPCR modeling
6 tools
Structure homology search
29 tools
Rescue site prediction
2 tools
Molecular replacement
4 tools
Experimental phasing
3 tools
Structure visualization
2 tools
