Protein structure analysis software tools and databases

Protein structure analysis steps

Most recent bioinformatics tools

ISPRED4
Web

ISPRED4

Predicts protein-protein interaction (PPI) sites on unbound monomer surfaces in…

Predicts protein-protein interaction (PPI) sites on unbound monomer surfaces in the absence of interaction partners. ISPRED4 exploits a richer set of 46 features derived from both sequence and…

CNNsite
Desktop

CNNsite

Classifies neural network. CNNsite combines the motif features captured by…

Classifies neural network. CNNsite combines the motif features captured by Convolutional Neural Network (CNN), the sequence features and the evolutionary features. It uses a window based approach.…

UCON
Desktop

UCON Unstructured regions through CONtact maps

Predicts natively unstructured regions through contacts. Ucon is: (i) highly…

Predicts natively unstructured regions through contacts. Ucon is: (i) highly accurate, (ii) quite orthogonal to other methods, and (iii) enables some specific interpretation of the meaning.

MD
Desktop

MD Meta-Disorder predictor

Molds various sources of information predominantly obtained from orthogonal…

Molds various sources of information predominantly obtained from orthogonal prediction methods. MD is able to (i) detect per-residue, (ii) identify and predict more proteins than other method, and…

Most popular analytical software and databases

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

CAVER
Desktop

CAVER

Provides rapid, accurate and fully automated calculation of tunnels and…

Provides rapid, accurate and fully automated calculation of tunnels and channels in static structures. The molecules amendable to analysis of CAVER include proteins, nucleic acids or inorganic…

MOLE
Desktop

MOLE

A web-based interactive application for the analysis of access/egress paths to…

A web-based interactive application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of…

MSV3d
Dataset

MSV3d Database of human MisSense Variants mapped to 3D protein structure

Provides full annotation of missense variants of all human proteins with…

Provides full annotation of missense variants of all human proteins with multi-level characterization including details of the physico-chemical changes induced by the amino acid modification,…

Curators for Protein structure analysis

  • Laurence Menu-Bouaouiche's avatar image
    Laurence Menu-Bouaouiche
    Department of Biology, University…
  • Thach Nguyen's avatar image Thach Nguyen's country flag
    Thach Nguyen
    thach nguyen
Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.