Protein structure data analysis software tools
To exert their biological functions, proteins fold into one or more specific conformations, dictated by complex and reversible non-covalent interactions. Determining the structure of a protein can be achieved by technics such as crystallography, nuclear-magnetic resonance spectroscopy, and dual polarization interferometry, and has implication for their biological functions. Structure analysis tools help predict various protein structure according to their amino-acid sequences.
Multiple structure alignment
72 tools
Sequence annotation visualization
14 tools
Quality assessment
38 tools
Crystallization prediction
38 tools
Crystallography data analysis
7 tools
Structural domain prediction
18 tools
Functional site prediction
26 tools
Conformational transition modeling
34 tools
Structure refinement
26 tools
Fold recognition
64 tools
Structure decoy generation
7 tools
Protein design
29 tools
Dihedral angle prediction
23 tools
Binding-site similarity detection
25 tools
Dynamic domain detection
4 tools
Structure manipulation
20 tools
Flexibility prediction
26 tools
Synthetic fusion protein design
2 tools
Structural motif detection
42 tools
Loop modeling
25 tools
Structure search
24 tools
Cavity detection
13 tools
Tunnel detection
9 tools
Channel detection
22 tools
Protein-protein interface prediction
83 tools
Disulfide bonding prediction
16 tools
Protein structure comparison
28 tools
Domain movement prediction
7 tools
Dynamics prediction
91 tools
Circular permutation prediction
3 tools
Coiled-coil domain prediction
22 tools
Internal symmetry prediction
4 tools
Knot prediction
6 tools
Stability change prediction
53 tools
Contact map prediction
67 tools
Hot spot prediction
16 tools
Structure validation
26 tools
Disorder prediction
64 tools
Co-evolving residue prediction
34 tools
Allosteric site prediction
13 tools
Volume calculation
16 tools
Repetitive element prediction
12 tools
Structure conservation prediction
27 tools
Secondary structure prediction
88 tools
Tertiary structure prediction
174 tools
GPCR modeling
7 tools
Structure homology search
31 tools
Rescue site prediction
2 tools
Molecular replacement
6 tools
Experimental phasing
3 tools
Structure visualization
21 tools
Molecular simulation
14 tools
IDPs binding site prediction
13 tools
Chemical shift prediction
16 tools
Bioinformatics workflows
7 tools
