Protein structure analysis software tools and databases

Protein structure analysis steps

Protein-RNA interactions

81 tools

Protein-DNA interaction prediction

72 tools

Sequence annotation visualization

7 tools

Quality assessment

28 tools

Crystallization prediction

20 tools

Structural domain prediction

5 tools

Functional site prediction

11 tools

Solvent accessibility prediction

10 tools

Protein-surface structure prediction

3 tools

Conformational transition modeling

10 tools

Conformational diversity data

3 tools

Solubility mutagenesis prediction

3 tools

Protein-protein structure prediction

4 tools

Structure refinement

14 tools

Fold recognition

37 tools

Structure decoy generation

6 tools

Protein design

13 tools

Dihedral angle prediction

13 tools

Binding-site similarity detection

14 tools

NMR structure refinement data

5 tools

Dynamic domain detection

3 tools

Structure manipulation

10 tools

Flexibility prediction

17 tools

Synthetic fusion protein design

3 tools

Structural motif detection

20 tools

Loop modeling

20 tools

Structure search

16 tools

Homo-oligomer structure prediction

4 tools

Cavity detection

9 tools

Tunnel detection

8 tools

Protein-protein interface prediction

48 tools

Pairwise structure alignment

46 tools

Channel detection

27 tools

Workflow systems

2 tools

Protein-metal site prediction

23 tools

Solubility prediction

9 tools

Disulfide bonding prediction

10 tools

Protein structure comparison

6 tools

Aggregation prediction

20 tools

Membrane proteins

148 tools

Domain movement prediction

6 tools

Dynamics prediction

39 tools

Circular permutation prediction

4 tools

Coiled-coil domain prediction

18 tools

Internal symmetry prediction

4 tools

Knot prediction

8 tools

Stability change prediction

43 tools

Hydration prediction

4 tools

Contact map prediction

47 tools

Hot spot prediction

18 tools

Structure validation

17 tools

Disorder prediction

50 tools

Multiple structure alignment

47 tools

Co-evolving residue prediction

19 tools

Allosteric site prediction

10 tools

Volume calculation

12 tools

Repetitive element prediction

11 tools

Structure conservation prediction

15 tools

Tertiary structure prediction

114 tools

GPCR modeling

3 tools

Structure homology search

10 tools

Secondary structure prediction

28 tools

Protein structure data

32 tools

Unclassified tools

37 tools

Self-interacting protein prediction

0 tools

Protein structure analysis software tools and databases

SCOPe Structural Classification of Proteins–extended

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Extends the development and maintenance of structural classification of…

Extends the development and maintenance of structural classification of proteins (SCOP). SCOPe provides ongoing classification of new Protein Data Bank (PDB) structures in the context of the SCOP…

XLink-DB

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Serves as a data storage site and visualization tool for cross-linking results.…

Serves as a data storage site and visualization tool for cross-linking results. XLink-DB accepts data generated with any cross-linker and stores them in a relational database. The method is a way to…

QAcon

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Using protein structural and contact information with machine learning…

Using protein structural and contact information with machine learning techniques. QAcon is a single-model quality assessment method utilizing structural features, physicochemical properties, and…

Curators for Protein structure analysis

Laurence Menu-Bouaouiche
Department of Biology, University…

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digital-media-for-bioinformatics

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