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Protein structure analysis software tools and databases

Protein structure analysis steps

Protein structure

Protein interaction

Protein membrane

Experts in Protein structure analysis

They share and annotate bioinformatics tools

Most recent bioinformatics tools

DeepSF
Web

DeepSF

Classifies proteins of variable-length into all known folds defined in SCOP…

Classifies proteins of variable-length into all known folds defined in SCOP 1.75 database. DeepSF is a 1D deep convolution neural network method that directly extracts hidden features from any…

FirstGlance
Web

FirstGlance

Assists in looking at the 3D structures of proteins, DNA, RNA, and their…

Assists in looking at the 3D structures of proteins, DNA, RNA, and their complexes. FirstGlance works within a web browser and enables the readers of scientific journals to see the main features of…

COSMIC-3D
Dataset

COSMIC-3D

Provides a platform for understanding cancer mutations in the context of 3D…

Provides a platform for understanding cancer mutations in the context of 3D protein structure. COSMIC-3D covers three types of cancer mutation, or a thermal map of missense recurrence, on the protein…

PredRBR
Desktop

PredRBR

Predicts protein-RNA binding sites. PredRBR is a RNA-binding residue prediction…

Predicts protein-RNA binding sites. PredRBR is a RNA-binding residue prediction method that uses the GTB algorithm for building multiple classification trees based on the 44 optimal features selected…

Most popular analytical software and databases

MOLE
Desktop

MOLE

A web-based interactive application for the analysis of access/egress paths to…

A web-based interactive application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

MAFFT
Web

MAFFT

Allows alignment of multiple sequences. MAFFT provides a range of different…

Allows alignment of multiple sequences. MAFFT provides a range of different methods such as L-INS-I or FFT-NS-2. It permits to add unaligned sequences into an existing alignment. This tool can…

CAVER
Desktop

CAVER

Provides rapid, accurate and fully automated calculation of tunnels and…

Provides rapid, accurate and fully automated calculation of tunnels and channels in static structures. The molecules amendable to analysis of CAVER include proteins, nucleic acids or inorganic…

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