Protein structure data analysis software tools
To exert their biological functions, proteins fold into one or more specific conformations, dictated by complex and reversible non-covalent interactions. Determining the structure of a protein can be achieved by technics such as crystallography, nuclear-magnetic resonance spectroscopy, and dual polarization interferometry, and has implication for their biological functions. Structure analysis tools help predict various protein structure according to their amino-acid sequences.
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Multiple structure alignment
87 tools
Sequence annotation visualization
19 tools
Quality assessment
58 tools
Crystallization prediction
40 tools
Crystallography data analysis
17 tools
Structural domain prediction
29 tools
Functional site prediction
28 tools
Conformational transition modeling
42 tools
Structure refinement
44 tools
Fold recognition
57 tools
Fold rate prediction
10 tools
Structure decoy generation
6 tools
Protein design
36 tools
Dihedral angle prediction
28 tools
Binding-site similarity detection
30 tools
Dynamic domain detection
4 tools
Structure manipulation
28 tools
Flexibility prediction
34 tools
Synthetic fusion protein design
2 tools
Structural motif detection
39 tools
Loop modeling
28 tools
Structure search
31 tools
Cavity detection
14 tools
Tunnel detection
10 tools
Channel detection
23 tools
Protein-protein interface prediction
97 tools
Disulfide bonding prediction
19 tools
Protein structure comparison
38 tools
Domain movement prediction
6 tools
Dynamics prediction
115 tools
Circular permutation prediction
5 tools
Coiled-coil domain prediction
22 tools
Internal symmetry prediction
5 tools
Knot prediction
5 tools
Stability change prediction
60 tools
Contact map prediction
78 tools
Hot spot prediction
21 tools
Structure validation
27 tools
Disorder prediction
72 tools
Co-evolving residue prediction
36 tools
Allosteric site prediction
14 tools
Volume calculation
18 tools
Repetitive element prediction
12 tools
Structure conservation prediction
23 tools
Secondary structure prediction
109 tools
Tertiary structure prediction
152 tools
GPCR modeling
8 tools
Structure homology search
53 tools
Rescue site prediction
2 tools
Molecular replacement
6 tools
Experimental phasing
3 tools
Structure visualization
54 tools
Molecular simulation
52 tools
IDPs binding site prediction
13 tools
Chemical shift prediction
17 tools
Quaternary structure prediction
7 tools
Hydrogen atom site prediction
2 tools
Bioinformatics workflows
18 tools
