Protein structure data analysis software tools
To exert their biological functions, proteins fold into one or more specific conformations, dictated by complex and reversible non-covalent interactions. Determining the structure of a protein can be achieved by technics such as crystallography, nuclear-magnetic resonance spectroscopy, and dual polarization interferometry, and has implication for their biological functions. Structure analysis tools help predict various protein structure according to their amino-acid sequences.
Multiple structure alignment
85 tools
Sequence annotation visualization
18 tools
Quality assessment
55 tools
Crystallization prediction
40 tools
Crystallography data analysis
15 tools
Structural domain prediction
24 tools
Functional site prediction
26 tools
Conformational transition modeling
36 tools
Structure refinement
42 tools
Fold recognition
54 tools
Fold rate prediction
9 tools
Structure decoy generation
6 tools
Protein design
33 tools
Dihedral angle prediction
27 tools
Binding-site similarity detection
28 tools
Dynamic domain detection
4 tools
Structure manipulation
28 tools
Flexibility prediction
32 tools
Synthetic fusion protein design
2 tools
Structural motif detection
38 tools
Loop modeling
25 tools
Structure search
28 tools
Cavity detection
13 tools
Tunnel detection
10 tools
Channel detection
23 tools
Protein-protein interface prediction
94 tools
Disulfide bonding prediction
18 tools
Protein structure comparison
36 tools
Domain movement prediction
6 tools
Dynamics prediction
104 tools
Circular permutation prediction
4 tools
Coiled-coil domain prediction
21 tools
Internal symmetry prediction
5 tools
Knot prediction
5 tools
Stability change prediction
56 tools
Contact map prediction
73 tools
Hot spot prediction
19 tools
Structure validation
26 tools
Disorder prediction
69 tools
Co-evolving residue prediction
35 tools
Allosteric site prediction
13 tools
Volume calculation
18 tools
Repetitive element prediction
12 tools
Structure conservation prediction
23 tools
Secondary structure prediction
100 tools
Tertiary structure prediction
148 tools
GPCR modeling
7 tools
Structure homology search
49 tools
Rescue site prediction
2 tools
Molecular replacement
6 tools
Experimental phasing
3 tools
Structure visualization
53 tools
Molecular simulation
43 tools
IDPs binding site prediction
13 tools
Chemical shift prediction
17 tools
Quaternary structure prediction
7 tools
Hydrogen atom site prediction
2 tools
Bioinformatics workflows
17 tools