Protein structure data analysis software tools
To exert their biological functions, proteins fold into one or more specific conformations, dictated by complex and reversible non-covalent interactions. Determining the structure of a protein can be achieved by technics such as crystallography, nuclear-magnetic resonance spectroscopy, and dual polarization interferometry, and has implication for their biological functions. Structure analysis tools help predict various protein structure according to their amino-acid sequences.
Multiple structure alignment
84 tools
Sequence annotation visualization
18 tools
Quality assessment
53 tools
Crystallization prediction
38 tools
Crystallography data analysis
13 tools
Structural domain prediction
23 tools
Functional site prediction
26 tools
Conformational transition modeling
34 tools
Structure refinement
41 tools
Fold recognition
53 tools
Fold rate prediction
9 tools
Structure decoy generation
5 tools
Protein design
33 tools
Dihedral angle prediction
27 tools
Binding-site similarity detection
28 tools
Dynamic domain detection
4 tools
Structure manipulation
26 tools
Flexibility prediction
30 tools
Synthetic fusion protein design
2 tools
Structural motif detection
38 tools
Loop modeling
25 tools
Structure search
26 tools
Cavity detection
13 tools
Tunnel detection
10 tools
Channel detection
23 tools
Protein-protein interface prediction
89 tools
Disulfide bonding prediction
18 tools
Protein structure comparison
33 tools
Domain movement prediction
6 tools
Dynamics prediction
99 tools
Circular permutation prediction
4 tools
Coiled-coil domain prediction
19 tools
Internal symmetry prediction
4 tools
Knot prediction
5 tools
Stability change prediction
56 tools
Contact map prediction
72 tools
Hot spot prediction
19 tools
Structure validation
24 tools
Disorder prediction
68 tools
Co-evolving residue prediction
35 tools
Allosteric site prediction
13 tools
Volume calculation
17 tools
Repetitive element prediction
12 tools
Structure conservation prediction
22 tools
Secondary structure prediction
99 tools
Tertiary structure prediction
146 tools
GPCR modeling
7 tools
Structure homology search
46 tools
Rescue site prediction
2 tools
Molecular replacement
6 tools
Experimental phasing
3 tools
Structure visualization
52 tools
Molecular simulation
40 tools
IDPs binding site prediction
13 tools
Chemical shift prediction
17 tools
Quaternary structure prediction
7 tools
Hydrogen atom site prediction
2 tools
Bioinformatics workflows
17 tools