Protein structure analysis software tools and databases

Protein structure analysis steps

Most recent bioinformatics tools

PMD
Dataset

PMD Protein Mutant Database

Provides a compilation of protein mutant data, providing information on…

Provides a compilation of protein mutant data, providing information on functional and/or structural influences brought about by amino acid mutations at specific positions of a protein. PMD is an…

OUNRES
Desktop
VOR Calculator
Desktop

VOR Calculator

Provides a program to calculate the volume overlap ratio.

Provides a program to calculate the volume overlap ratio.

Seder
Desktop

Seder

Provides a global protein structure method. Seder is a knowledge-based function…

Provides a global protein structure method. Seder is a knowledge-based function that scores protein decoys based on their similarity to native structure. It provides a set of features constructed to…

Most popular analytical software and databases

MOLE
Desktop

MOLE

A web-based interactive application for the analysis of access/egress paths to…

A web-based interactive application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

MAFFT
Web

MAFFT

Allows alignment of multiple sequences. MAFFT provides a range of different…

Allows alignment of multiple sequences. MAFFT provides a range of different methods such as L-INS-I or FFT-NS-2. It permits to add unaligned sequences into an existing alignment. This tool can…

CAVER
Desktop

CAVER

Provides rapid, accurate and fully automated calculation of tunnels and…

Provides rapid, accurate and fully automated calculation of tunnels and channels in static structures. The molecules amendable to analysis of CAVER include proteins, nucleic acids or inorganic…

Curators for Protein structure analysis

  • Laurence Menu-Bouaouiche's avatar image
    Laurence Menu-Bouaouiche
    Department of Biology, University…
  • Thach Nguyen's avatar image Thach Nguyen's country flag
    Thach Nguyen
    thach nguyen
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