Protein structure data analysis software tools
To exert their biological functions, proteins fold into one or more specific conformations, dictated by complex and reversible non-covalent interactions. Determining the structure of a protein can be achieved by technics such as crystallography, nuclear-magnetic resonance spectroscopy, and dual polarization interferometry, and has implication for their biological functions. Structure analysis tools help predict protein structure according to their amino-acid sequences.
Multiple structure alignment
68 tools
Sequence annotation visualization
14 tools
Quality assessment
38 tools
Crystallization prediction
39 tools
Structural domain prediction
15 tools
Functional site prediction
25 tools
Conformational transition modeling
20 tools
Structure refinement
25 tools
Fold recognition
59 tools
Structure decoy generation
7 tools
Protein design
25 tools
Dihedral angle prediction
25 tools
Binding-site similarity detection
20 tools
Dynamic domain detection
4 tools
Structure manipulation
19 tools
Flexibility prediction
24 tools
Synthetic fusion protein design
2 tools
Structural motif detection
42 tools
Loop modeling
23 tools
Structure search
22 tools
Cavity detection
11 tools
Tunnel detection
8 tools
Channel detection
21 tools
Protein-protein interface prediction
71 tools
Disulfide bonding prediction
14 tools
Protein structure comparison
24 tools
Domain movement prediction
7 tools
Dynamics prediction
80 tools
Circular permutation prediction
3 tools
Coiled-coil domain prediction
18 tools
Internal symmetry prediction
4 tools
Knot prediction
6 tools
Stability change prediction
51 tools
Contact map prediction
67 tools
Hot spot prediction
15 tools
Structure validation
19 tools
Disorder prediction
68 tools
Co-evolving residue prediction
31 tools
Allosteric site prediction
13 tools
Volume calculation
16 tools
Repetitive element prediction
12 tools
Structure conservation prediction
26 tools
Secondary structure prediction
83 tools
Tertiary structure prediction
162 tools
GPCR modeling
7 tools
Structure homology search
29 tools
Rescue site prediction
2 tools
Molecular replacement
5 tools
Experimental phasing
3 tools
Structure visualization
3 tools
Molecular simulation
8 tools
Bioinformatics workflows
3 tools
