Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Protein feature visualization software tools | Sequence analysis

The ability to integrate and visualize experimental proteomic evidence in the context of rich protein feature annotations represents an unmet need of the proteomics community.Source text:(Omasits et al., 2014) Protter: interactive protein feature…
TnT
Desktop

TnT

A set of libraries aimed at creating powerful tree- and track-based…

A set of libraries aimed at creating powerful tree- and track-based visualisations for the web. Its modularity and rich API facilitate the development of many different visualisations ranging from…

POLYVIEW-MM
Web

POLYVIEW-MM

Integrates high-quality animation of molecular motion (MM) with structural and…

Integrates high-quality animation of molecular motion (MM) with structural and functional analysis of macromolecules.

ProtVista
Desktop

ProtVista

Permits to visualize graphical representation of protein sequence features in…

Permits to visualize graphical representation of protein sequence features in the UniProt Knowledgebase, experimental proteomics and variation public datasets. ProtVista lays out, maps, orients, and…

ePlant
Web

ePlant

Allows exploration of Arabidopsis thaliana through multiple levels. ePlant…

Allows exploration of Arabidopsis thaliana through multiple levels. ePlant permits researchers to extract information from their data. It can identify connections between layers and facilitate…

ProViz
Web

ProViz

A browser-based interactive exploration tool to investigate the functional and…

A browser-based interactive exploration tool to investigate the functional and evolutionary features of protein sequences. The browser-based interface of ProViz provides numerous advantages,…

I-PV
Desktop

I-PV Interactive Protein Sequence Visualization

Allows to visualize user supplied protein sequence, conservation and single…

Allows to visualize user supplied protein sequence, conservation and single nucleotide variant (SNV) in a live presentable format. I-PV is an interactive data visualization software that comes with…

protr/ProtrWeb
Desktop
Web

protr/ProtrWeb

A comprehensive R package for generating various numerical representation…

A comprehensive R package for generating various numerical representation schemes of proteins and peptides from amino acid sequence. The package calculates eight descriptor groups composed of twenty…

KIDFamMap
Dataset

KIDFamMap Kinase-inhibitor-disease family map

Allows exploration of kinase-inhibitor families (KIFs) and…

Allows exploration of kinase-inhibitor families (KIFs) and kinase-inhibitor-disease (KID) relationships. KIDFamMap can provide further insights in the elucidation of protein kinase inhibitor…

Protael
Desktop

Protael

A JavaScript library for creating interactive visualizations of biological…

A JavaScript library for creating interactive visualizations of biological sequences and various associated data. Protael allows users to generate high-quality vector graphics (SVG) and integrate it…

pViz.js
Desktop

pViz.js

A visualization library for displaying protein sequence features in a Web…

A visualization library for displaying protein sequence features in a Web browser. By simply providing a sequence and the locations of its features, this lightweight, yet versatile, JavaScript…

GiaPronto
Web

GiaPronto

Processes data and plots a variety of common and less common graphs for the…

Processes data and plots a variety of common and less common graphs for the analysis of proteomics datasets. GiaPronto is fully automated and provides both quality control and biological…

IBS
Desktop
Web

IBS Illustrator of Biological Sequences

A Java software for assisting experimentalists in drawing publication-quality…

A Java software for assisting experimentalists in drawing publication-quality diagrams of both protein and nucleotide sequences. With a dual-mode user interface, users are allowed to produce their…

Victor
Desktop

Victor VIrtual Constrution TOol for pRoteins

An open-source project dedicated to providing tools for analyzing and…

An open-source project dedicated to providing tools for analyzing and manipulating protein structures. The provided application examples cover statistical energy potentials, profile-profile sequence…

CodaChrome
Desktop

CodaChrome

Assesses relationships between proteins rather than genes because amino acid…

Assesses relationships between proteins rather than genes because amino acid identities provide a more robust signal at high levels of divergence. CodaChrome can be used to address questions of…

PepShell
Algorithm

PepShell

Allows interactive data analysis of mass spectrometry-based conformational…

Allows interactive data analysis of mass spectrometry-based conformational proteomics studies by visualization of the identified peptides both at the sequence and structure levels. Moreover, PepShell…

MolIDE
Desktop

MolIDE

Provides a graphical interface for basic comparative (homology) modeling using…

Provides a graphical interface for basic comparative (homology) modeling using SCWRL and other programs. MolIDE takes an input target sequence and uses PSI-BLAST to identify and align templates for…

dagLogo
Desktop

dagLogo

Visualizes significant conserved amino acid sequence pattern in groups based on…

Visualizes significant conserved amino acid sequence pattern in groups based on probability theory. Compare to iceLogo, dagLogo can also visualize significant sequence patterns by clustering the…

MODexplorer
Web

MODexplorer

An integrated tool aimed at exploring the sequence, structural and functional…

An integrated tool aimed at exploring the sequence, structural and functional diversity in protein families useful in homology modeling and in analyzing protein families in general. MODexplorer can…

TMRPres2D
Desktop

TMRPres2D TransMembrane protein Re-Presentation in 2-Dimensions

Automates the creation of uniform, two-dimensional, high analysis graphical…

Automates the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and structural information may…

POLYVIEW-2D
Web

POLYVIEW-2D

It can be used to generate amino acid sequence annotations, such as secondary…

It can be used to generate amino acid sequence annotations, such as secondary structure, relative solvent accessibility, evolutionary conservation, and physico-chemical property profiles.

FeatureViewer
Desktop

FeatureViewer

A BioJS component that lays out, maps, orients, and renders position-based…

A BioJS component that lays out, maps, orients, and renders position-based annotations for protein sequences. This component is highly flexible and customizable, allowing the presentation of…

Sequence
Desktop

Sequence

A BioJS component for visualising sequences with a set of options supporting a…

A BioJS component for visualising sequences with a set of options supporting a flexible configuration of the visual representation, such as formats, colours, annotations, and columns, among others.…

Swiss-PdbViewer
Desktop

Swiss-PdbViewer

An application that provides a user friendly interface allowing to analyze…

An application that provides a user friendly interface allowing to analyze several proteins at the same time.

POLYVIEW-3D
Web

POLYVIEW-3D

A tool for protein structure analysis, with the focus on annotation and…

A tool for protein structure analysis, with the focus on annotation and visualization of protein complexes.

showfeat
Desktop

showfeat

Displays features of a sequence in pretty format. showfeat reads one or more…

Displays features of a sequence in pretty format. showfeat reads one or more protein or nucleic sequences with associated feature tables, and writes the features to file in a style suitable for…

showseq
Desktop

showseq

Computes sequences with features in pretty format. showseq displays one or more…

Computes sequences with features in pretty format. showseq displays one or more nucleic acid sequences, with features, in a style suitable for publication. Optionally, the sequence feature table can…

showpep
Desktop

showpep

Displays protein sequences with features in pretty format. showpep displays one…

Displays protein sequences with features in pretty format. showpep displays one or more protein sequences, with features, in a style suitable for publication. The user may pick a format from a list,…

TOPO
Web

TOPO

A software tool for creating transmembrane protein 2D topology images. It makes…

A software tool for creating transmembrane protein 2D topology images. It makes no attempt to predict the TMDs that it displays. The user needs to supply that information. Residues of interest can be…

FPV
Desktop

FPV Fast Protein Visualization

Delivers techniques for organizing a Java 3D scene graph. FPV is a…

Delivers techniques for organizing a Java 3D scene graph. FPV is a high-performance protein visualization application and a hybrid method combining both retained mode and immediate mode graphics. The…

RbDe
Web

RbDe Residue-based Diagram editor

A web-based software that greatly simplifies the construction of schematic…

A web-based software that greatly simplifies the construction of schematic diagrams of proteins. Residue-based diagrams display the sequence of a given protein in the context of its secondary and…

Protter
Web

Protter

A web-based tool that supports interactive protein data analysis and hypothesis…

A web-based tool that supports interactive protein data analysis and hypothesis generation by visualizing both annotated sequence features and experimental proteomic data in the context of protein…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.