ProteinCenter statistics

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ProteinCenter specifications

Information


Unique identifier OMICS_02551
Name ProteinCenter
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

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ProteinCenter in publications

 (51)
PMCID: 5841401
PMID: 29531806
DOI: 10.1038/s41420-017-0001-x

[…] and sprotp (http://reprod.njmu.edu.cn/sprotp),–. string tool (http://string-db.org) was used to classify protein precursors according to their biological processes and molecular functions. proteincenter software (thermo scientific) was used for classification of subcellular localization of the precursor proteins. grand average of hydropathicity (gravy) index computed by using protparam […]

PMCID: 5569081
PMID: 28835709
DOI: 10.1038/s41467-017-00561-0

[…] for each cell type, a deglycosylated site was considered to be present if it was quantified in at least two replicates. all gene ontology, pathway and protein keyword analysis was performed using proteincenter (thermo scientific). unsupervised clustering of samples was performed using pearson correlation, and k-means unsupervised learning algorithm was used for clustering deglycosylated sites […]

PMCID: 5570484
PMID: 28837649
DOI: 10.1371/journal.pone.0183896

[…] (psm), percolator was used to calculate q-values as measures of statistical confidence for each psm. we filtered the output with q < 0.01., the identified secretory proteins were analyzed using proteincenter (proxeon bioinformatics, http://www.cbs.dtu.dk/services). we submitted several proteins in one fasta format file for each program. we used signalp (version 4.0, […]

PMCID: 5568403
PMID: 28832675
DOI: 10.1371/journal.pone.0182844

[…] estimation in proteome discoverer was performed on the percolator algorithm using the q-value for validation []. gene ontology (go) analyses of ‘cellular component’ categories were undertaken with proteincenter software (version 3.12; thermo fisher scientific) and included all proteins from the three datasets, which had passed the aforementioned stringency filters. the graph depicting tmt […]

PMCID: 5490438
PMID: 28706483
DOI: 10.3389/fphar.2017.00398

[…] functions of the differentially expressed proteins from both compound treatments relative to vehicle control were analyzed on the gene ontology (go) search through proteome discoverer application to proteincenter database. go biological process annotation of the up- and down-regulated proteome observed in compound treatment was carried out using david bioinformatic resources 6.8. […]


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