ProteinEvolver specifications

Unique identifier:
OMICS_13159
Interface:
Command line interface
Input data:
Protein information, user-specific tree, recombination hotspots, empirical user-specified amino acid matrix, site by site variable substitution rate
Output data:
Sequence alignment, ancestral sequence, energies for the native structural protein and the simulated ones, simulated tree
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.2.0
Source code URL:
https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/proteinevolver/ProteinEvolver-1.2.0.zip
Software type:
Package/Module
Restrictions to use:
None
Input format:
PDB
Output format:
PHYLIP, FASTA, NEXUS
Programming languages:
C
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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ProteinEvolver support

Maintainer

  • Miguel Arenas <>

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Credits

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Publications

Institution(s)

Centre for Molecular Biology ‘Severo Ochoa’, Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain; Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain

Funding source(s)

Spanish Ministery of Economy, ‘Juan de la Cierva’ fellowship JCI-2011-10452, grants BFU2011-24595 and BFU2012-40020; European Research Council (ERC-2007-Stg-203161-PHYGENOM)

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