ProteinEvolver specifications

Information


Unique identifier OMICS_13159
Name ProteinEvolver
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein information, user-specific tree, recombination hotspots, empirical user-specified amino acid matrix, site by site variable substitution rate
Input format PDB
Output data Sequence alignment, ancestral sequence, energies for the native structural protein and the simulated ones, simulated tree
Output format PHYLIP, FASTA, NEXUS
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2.0
Stability Stable
Source code URL https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/proteinevolver/ProteinEvolver-1.2.0.zip
Maintained Yes

Versioning


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Maintainer


  • person_outline Miguel Arenas <>

ProteinEvolver article

ProteinEvolver institution(s)
Centre for Molecular Biology ‘Severo Ochoa’, Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain; Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain
ProteinEvolver funding source(s)
Spanish Ministery of Economy, ‘Juan de la Cierva’ fellowship JCI-2011-10452, grants BFU2011-24595 and BFU2012-40020; European Research Council (ERC-2007-Stg-203161-PHYGENOM)

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