ProteinPaint statistics

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Associated diseases

Associated diseases

ProteinPaint specifications


Unique identifier OMICS_19510
Name ProteinPaint
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No


This tool is not available anymore.

Additional information

Publication for ProteinPaint

ProteinPaint in publications

PMCID: 5872828
PMID: 29514090
DOI: 10.1016/j.celrep.2018.01.075

[…] ii (pol ii), dna methylation, assay for transposable-accessible chromatin sequencing (atac-seq), and rna sequencing (rna-seq) data for adult retina (data available at; ). to integrate the individual chip-seq tracks, we performed chromatin hidden markov modeling (chromhmm) using 11 chromhmm states, as done previously for murine retina […]

PMCID: 5587568
PMID: 28878254
DOI: 10.1038/s41598-017-10333-x

[…] clinical pathogenicity classifier with improved sensitivity. pathway analysis was performed using molecular signatures database (msigdb; broad institute). protein domains were visualized using proteinpaint (pecan data portal,, patient genomic dna were hybridized to a mixture of probes targeting 29 hereditary cancer genes, ligated, barcoded […]

PMCID: 5354859
PMID: 27894077
DOI: 10.18632/oncotarget.13492

[…] exon 5 (), and terf2 exon 10-jak2 exon 19 with a deletion of the last 11 coding nucleotides of terf2 exon 10 (). all detected fusion transcripts encode in-frame fusion proteins as evaluated using proteinpaint []., expression of affymetrix u133 plus 2.0 probe set 208303_s_at above the 90th percentile of the total bcp-all group, as described previously []., deletion of il3ra and csf2ra […]

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ProteinPaint institution(s)
Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, TN, USA; Department of Pathology, St. Jude Children’s Research Hospital, Memphis, TN, USA
ProteinPaint funding source(s)
Supported by the St. Jude Children’s Research Hospital-Washington University Pediatric Cancer Genome Project, Cancer Center support grant P30 CA021765 from the US National Cancer Institute, and American Lebanese Syrian Associated Charities of St. Jude Children’s Research Hospital.

ProteinPaint review

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An excellent tool for visualization of gene mutations and gene fusions data.