ProteinPaint statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Variant visualization chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ProteinPaint specifications

Information


Unique identifier OMICS_19510
Name ProteinPaint
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Additional information


https://docs.google.com/document/d/1JWKq3ScW62GISFGuJvAajXchcRenZ3HAvpaxILeGaw0/edit

Publication for ProteinPaint

ProteinPaint in publications

 (3)
PMCID: 5872828
PMID: 29514090
DOI: 10.1016/j.celrep.2018.01.075

[…] ii (pol ii), dna methylation, assay for transposable-accessible chromatin sequencing (atac-seq), and rna sequencing (rna-seq) data for adult retina (data available at https://pecan.stjude.org/proteinpaint/study/retina2017; ). to integrate the individual chip-seq tracks, we performed chromatin hidden markov modeling (chromhmm) using 11 chromhmm states, as done previously for murine retina […]

PMCID: 5587568
PMID: 28878254
DOI: 10.1038/s41598-017-10333-x

[…] clinical pathogenicity classifier with improved sensitivity. pathway analysis was performed using molecular signatures database (msigdb; broad institute). protein domains were visualized using proteinpaint (pecan data portal, https://pecan.stjude.org/proteinpaint/)., patient genomic dna were hybridized to a mixture of probes targeting 29 hereditary cancer genes, ligated, barcoded […]

PMCID: 5354859
PMID: 27894077
DOI: 10.18632/oncotarget.13492

[…] exon 5 (), and terf2 exon 10-jak2 exon 19 with a deletion of the last 11 coding nucleotides of terf2 exon 10 (). all detected fusion transcripts encode in-frame fusion proteins as evaluated using proteinpaint []., expression of affymetrix u133 plus 2.0 probe set 208303_s_at above the 90th percentile of the total bcp-all group, as described previously []., deletion of il3ra and csf2ra […]


To access a full list of publications, you will need to upgrade to our premium service.

ProteinPaint institution(s)
Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, TN, USA; Department of Pathology, St. Jude Children’s Research Hospital, Memphis, TN, USA
ProteinPaint funding source(s)
Supported by the St. Jude Children’s Research Hospital-Washington University Pediatric Cancer Genome Project, Cancer Center support grant P30 CA021765 from the US National Cancer Institute, and American Lebanese Syrian Associated Charities of St. Jude Children’s Research Hospital.

ProteinPaint review

star_border star_border star_border star_border star_border
star star star star star

Jeff

star_border star_border star_border star_border star_border
star star star star star
Web
An excellent tool for visualization of gene mutations and gene fusions data.