ProSE specifications


Unique identifier OMICS_02554
Name ProSE
Alternative name Proteios Software Environment
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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ProSE article

ProSE citations

PMCID: 4192290

[…] mode and fragmented in the linear ion trap, with settings as in ali, et al. [58]. files were converted to mzml [67] and mascot generic format (mgf) using proteowizard [68] and uploaded to the proteios software environment, prose [69]. mgf files were used for ms/ms identification, and mzml files for feature detection using msinspect [70]. peptide and protein identification were performed […]

PMCID: 3205851

[…] distiller (version was used to process the generated raw-data files into mzdata file format. all generated ms and ms/ms data for the colon set were then uploaded and stored in the the proteios software environment (prose) (35) and deposited in pride (36) (accession numbers 13401–13512). the proteios platform was used for performing automated database searches in both mascot and x! […]

PMCID: 2817556

[…] [11], using a mass window of 0.2 m/z and a time window of 250 scans. after alignment, significantly upregulated features were scheduled for targeted ms/ms in inclusion lists generated using the prose 2.1 platform [12]. the inclusion limit was a fold change of at least 1.5 and a p-value of 0.05 in a student's t-test. for the t-test the total intensities, which represent the integrated peak […]

ProSE institution(s)
Department of Oncology, Clinical Sciences, Lund University, Lund, Sweden; Department of Theoretical Physics, Lund University, Lund, Sweden; Department of Immunotechnology, Lund University, Lund, Sweden; CREATE Health Strategic Centre for Translational Cancer Research, Lund University, Lund, Sweden

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