Tool stats & trends
Looking to identify usage trends or leading experts?
|Interface||Graphical user interface|
|Restrictions to use||None|
No version available
Publication for ProteoAnnotator
Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes
[…] ponding RNA-sequencing data on a reference genome are now increasingly indispensable. Numerous approaches have been implemented such as Proteogenomic Mapping Tool (), PGNexus (), PGMiner (), ACTG (), ProteoAnnotator (), ProBamSuite (), iPiG (), and PGx (). Key attributes such as mapping reference (proteome or genome), grade of integration with other proteomics tools, and support of online and offl […]
Stage specific Proteomes from Onchocerca ochengi, Sister Species of the Human River Blindness Parasite, Uncover Adaptations to a Nodular Lifestyle*
[…] (i.e. a single gene incorrectly annotated as two or more genes because of fragmentation between contigs and/or frameshift errors) affect the accuracy of protein identification and quantification, the ProteoAnnotator pipeline () was used to objectively assess the strength of evidence for peptide-spectrum matches against O. ochengi versus O. volvulus gene models.The O. ochengi gene models from relea […]
A large scale proteogenomics study of apicomplexan pathogens—Toxoplasma gondii and Neospora caninum
[…] http://toxodb.org/cgi-bin/gbrowse/toxodb/?start=5924028;stop=5974027;ref=TGME49_chrVIII;width=800;version=100;flip=0;grid=1;id=d6546393407f30e0e323ffd34a77b61a;l=peptide_ToxoDB_18db2e_http_http://www.proteoannotator.org_datasets_Toxo10_official_peptides.gff_1%1EGene—where datasets can be viewed alongside RNA-Seq and other large-scale datasets (On GBrowse—Click “Select Tracks,” “Supplementary Data […]
Looking to check out a full list of citations?
Be the first to review ProteoAnnotator