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Proteogenomic data analysis software tools

Proteogenomics is an area of research at the interface of proteomics and genomics. In this approach, customized protein sequence databases generated using genomic and transcriptomic information are used to help identify novel peptides (not present in reference protein sequence databases) from mass spectrometry-based proteomic data; in turn, the proteomic data can be used to provide protein-level evidence of gene expression and to help refine gene models.

Source text:
(Nesvizhskii, 2014) Proteogenomics: concepts, applications and computational strategies. Nat Methods.

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