ProteoIQ statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ProteoIQ

Tool usage distribution map

This map represents all the scientific publications referring to ProteoIQ per scientific context
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Associated diseases

This word cloud represents ProteoIQ usage per disease context

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ProteoIQ specifications


Unique identifier OMICS_05590
Name ProteoIQ
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Mac OS, Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes


No version available


  • person_outline Beacon Designer Team

ProteoIQ citations


Exploiting glycan topography for computational design of Env glycoprotein antigenicity

PLoS Comput Biol
PMCID: 5931682
PMID: 29677181
DOI: 10.1371/journal.pcbi.1006093

[…] the gp120 protein database using SEQUEST (Proteome Discoverer 1.4, Thermo Fisher Scientific) with full MS peptide tolerance of 20 ppm and MS2 peptide fragment tolerance of 0.5 Da, and filtered using ProteoIQ (v2.7, Premier Biosoft) at the protein level to generate a 1% false discovery rate for protein assignments. Glycan occupancy Gai of a potential glycosylation sequon ai was determined as follo […]


S Nitrosoglutathione Reductase Underlies the Dysfunctional Relaxation to Nitric Oxide in Preterm Labor

Sci Rep
PMCID: 5884813
PMID: 29618799
DOI: 10.1038/s41598-018-23371-w

[…] PROTEOIQ (V2.6, was used to validate MS/MS-based peptide and protein identifications. Peptides were parsed before analysis with a minimum Xcorr value of 1.5 and a minimum length of six […]


Molecular and functional analysis of anchorage independent, treatment evasive neuroblastoma tumorspheres with enhanced malignant properties: A possible explanation for radio therapy resistance

PLoS One
PMCID: 5751995
PMID: 29298329
DOI: 10.1371/journal.pone.0189711

[…] proteins from each band were digested with trypsin and sequenced by Liquid Chromatography Mass Spectrometry/ Mass Spectrometry (LC-MS/MS) and identified by searching against murine databases. We used ProteoIQ software (Bioinquire, Atlanta GA), for our analysis as previously described [, ]. The advantage of ProteoIQ is its ability to extract the spectral counts (SCs) for each peptide and compare it […]


Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio)

PLoS One
PMCID: 5690628
PMID: 29145436
DOI: 10.1371/journal.pone.0188084

[…] trypsin, with one miscleavage allowed. The allowed protein modifications were fixed carbamidomethylation of cysteines and variable oxidation of methionine. Attributed spectra were then analyzed using ProteoIQ 2.8 (Premier Biosoft, Palo Alto, CA, USA) at < 1% FDR, 0.5% minimum protein group probability, and 6 aa minimum peptide length, in order to identify egg quality group-specific and common prot […]


Data set of proteomic analysis of food borne pathogens after treatment with the disinfectants based on pyridoxal oxime derivatives

PMCID: 5671409
PMID: 29124101
DOI: 10.1016/j.dib.2017.09.060

[…] gment ions. Concatenated databases with both “target” and decoy sequences were utilized to estimate the false discovery rate (FDR), Protein identifications were derived from the peptide matches using ProteoIQ v.2. 3.08 . To provide high confidence on peptide sequence assignment and protein identification, data were filtered following stringent criteria: Mowse score of more than 28 for all charge s […]


Properties of the cuticular proteins of Anopheles gambiae as revealed by serial extraction of adults

PLoS One
PMCID: 5395146
PMID: 28419115
DOI: 10.1371/journal.pone.0175423

[…] n Tribolium lowered desiccation resistance.What is important for the current study, is that the final pellet has CPs as its major components. Proteins in are grouped by shared peptides calculated by ProteoIQ. If a protein had all unique peptides it occupies a single line in this table. Others with shared peptides were highlighted before being sorted for abundance using normalized spectral counts. […]

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