Proteome Discoverer specifications


Unique identifier OMICS_04551
Name Proteome Discoverer
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Medium
Version 2.1
Stability Stable
Requirements Mascot, Proteome Discover
Maintained Yes


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Proteome Discoverer citations

PMCID: 5931682

[…] scientific). a protein database was compiled from 94 gp120 protein sequences provided by immune technology corporation. raw spectra were searched against the gp120 protein database using sequest (proteome discoverer 1.4, thermo fisher scientific) with full ms peptide tolerance of 20 ppm and ms2 peptide fragment tolerance of 0.5 da, and filtered using proteoiq (v2.7, premier biosoft) […]

PMCID: 5690628

[…] and project doi number 10.6019/pxd005137, and the multiple samples experiment dataset accession number pxd005129 and project doi number 10.6019/pxd005129., the spectra search was performed with the proteome discoverer 1.2 software supported by mascot (mascot server v2.2.07; obtained ms/ms spectra were searched against a target-decoy concatenated database created […]

PMCID: 5658099

[…] dynamic exclusion duration was set to 30 s with a 10-ppm tolerance around the selected precursor and its isotopes. automatic gain control target was set to 5×104 with an injection time of 120 ms., proteome discoverer (v1.4, thermo scientific) was used for protein identification and the acquired ms/ms spectra were searched with sequest ht algorithm against the uniprot reviewed database […]

PMCID: 5658386

[…] for ms/ms, a microscan was obtained at 17,500fwhm and with an isolation window of 3.0 m/z, using a scan range between m/z 200–2000 m/z. tandem mass spectra were processed with the thermo scientific proteome discoverer software v 1.3. spectra were searched against uniprotkb/swiss-prot mouse databases (version 09/2015) using the sequest ht algorithm (v1.3.0.339). the search was performed choosing […]

PMCID: 5671472

[…] spectra were acquired with 15,000 resolving power and a maximum integration time of 120 ms. measurements were performed using m/z 445.1 as lock mass., the.raw data files were analyzed using the proteome discoverer software (thermo scientific), using the sequest search engine applying the homo sapiens.fasta databases. ms/ms searches were performed using a 10 ppm parent ion mass tolerance […]

Proteome Discoverer institution(s)
Thermo Fisher Scientific, San Jose, CA, USA

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