Protocols

ProteomeScout specifications

Information


Unique identifier OMICS_06773
Name ProteomeScout
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Allowed
Content license CC Attribution-NonCommercial-ShareAlike
Maintained Yes

Maintainers


  • person_outline Kristen Naegle
  • person_outline ProteomeScout Team

Additional information


https://www.assembla.com/spaces/proteomescout/wiki

Publication for ProteomeScout

ProteomeScout citations

 (2)
call_split

Reproducible Analysis of Post Translational Modifications in Proteomes—Application to Human Mutations

2015
PLoS One
PMCID: 4685989
PMID: 26659599
DOI: 10.1371/journal.pone.0144692
call_split See protocol

[…] r study bias, PTM enrichment, and resampling for charge distributions are available in the iPython notebooks. SVG exports for RAF1 studies and data from the study by Rigbolt et al. [] were taken from ProteomeScout []. […]

library_books

The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection

2014
Nucleic Acids Res
PMCID: 4383995
PMID: 25593347
DOI: 10.1093/nar/gku1241

[…] of proteins is reflected in continued efforts to capture the diversity of PTMs and their biological significance. This issue includes dbDNO, which specifically deals with protein S-nitrosylation, and ProteomeScout, which neatly adds context to raw PTM data with context from various databases (,). The important involvement of PTMs in modulating protein–protein interactions is addressed by the PTMco […]

ProteomeScout institution(s)
Department of Biomedical Engineering and the Center for Biological Systems Engineering, Washington University, St Louis, MO, USA

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