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Protocols

ProteomeXchange specifications

Information


Unique identifier OMICS_02458
Name ProteomeXchange
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Rolf Apweiler

Publication for ProteomeXchange

ProteomeXchange citations

 (530)
library_books

Targeting G protein coupled receptor signaling at the G protein level with a selective nanobody inhibitor

2018
Nat Commun
PMCID: 5959942
PMID: 29777099
DOI: 10.1038/s41467-018-04432-0

[…] ral matches), 0.05. Sequest searches were also performed against five Gβ subtypes using the same parameters to confirm the identities of the peptides and the sequence coverage. Data are available via ProteomeXchange with identifier PXD009503. […]

call_split

Hookworm Secreted Extracellular Vesicles Interact With Host Cells and Prevent Inducible Colitis in Mice

2018
Front Immunol
PMCID: 5936971
PMID: 29760697
DOI: 10.3389/fimmu.2018.00850
call_split See protocol

[…] on, UK) and X!Tandem, MS-GF+, OMSSA, and Tide search engines using SearchGUI (). The same parameters were used as described in Ref. ().The mass spectrometry proteomics data have been deposited in the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifiers PXD009165 and 10.6019/PXD009165. A final list of parasite-specific proteins resulted by combining the different […]

library_books

Nucleolar nucleoplasmic shuttling of TARG1 and its control by DNA damage induced poly ADP ribosylation and by nucleolar transcription

2018
Sci Rep
PMCID: 5928194
PMID: 29712969
DOI: 10.1038/s41598-018-25137-w

[…] The mass spectrometry proteomics data (raw MS data), MaxQuant output txt files and the corresponding fasta file have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD008748. […]

library_books

Structural basis for energy transduction by respiratory alternative complex III

2018
Nat Commun
PMCID: 5928083
PMID: 29712914
DOI: 10.1038/s41467-018-04141-8

[…] SM validation was performed by Percolator. Identified proteins were validated using the Mascot and MaxQuant software packages. All proteomic data associated with this study have been deposited to the ProteomeXchange Consortium via the PRIDE partner and is available using the accession number PXD008247. […]

library_books

GSTM3 and GSTP1: novel players driving tumor progression in cervical cancer

2018
Oncotarget
PMCID: 5955133
PMID: 29774096
DOI: 10.18632/oncotarget.24796

[…] performed using MASCOT search engine through the MASCOT Distiller interface (Matrix Science). The queried database was the Swiss-Prot. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [] partner repository with the dataset identifier PXD005466. […]

call_split

PAF1 complex interactions with SETDB1 mediate promoter H3K9 methylation and transcriptional repression of Hoxa9 and Meis1 in acute myeloid leukemia

2018
Oncotarget
PMCID: 5955148
PMID: 29774127
DOI: 10.18632/oncotarget.25204
call_split See protocol

[…] alse discovery rate (FDR) was determined using Percolator and proteins/peptides with an FDR of ≤1% were retained for further analysis. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD009439 []. […]

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