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Proteome databases | Sequence analysis

A number of websites provide host services for massive proteomic data sets. These repositories are excellent resources for accessing raw data and quick experimental summaries.

PRIDE
Dataset

PRIDE PRoteomics IDEntifications database

A centralized, standards compliant, public data repository for proteomics data,…

A centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE…

ProteINSIDE
Web

ProteINSIDE

Integrates complementary analyses to produce information about proteins in one…

Integrates complementary analyses to produce information about proteins in one online automated package. ProteINSIDE is able to extract information for a list of genes or proteins ID from myriad data…

EBI
Dataset

EBI EMBL-EBI - The European Bioinformatics Institute

Supplies an access to several biological data resources. EBI is a database that…

Supplies an access to several biological data resources. EBI is a database that covers the entire range of biological sciences: raw DNA sequences to curated proteins, chemicals, structures, systems,…

The Medicago…
Dataset

The Medicago Proteome Atlas

An atlas of protein expression of Medicago truncatula in association with…

An atlas of protein expression of Medicago truncatula in association with Sinorhizobium meliloti. The Medicago Proteome Atlas provides evidence for more than 23013 protein groups (19679 from the…

Escherichia…
Dataset

Escherichia coli Multi-omics Database

Provides a database of E. coli. Escherichia coli Multi-omics Database offers a…

Provides a database of E. coli. Escherichia coli Multi-omics Database offers a comprehensive knowledge of the quantitative information regarding the inner molecular components of cells.

neXtProt
Dataset

neXtProt

Offers a seamless integration of and navigation through protein-related data.…

Offers a seamless integration of and navigation through protein-related data. NeXtProt contains proteomics data for over 85% of human proteins. Moreover, this tool includes over 8000 phenotypic…

C-HPP
Web

C-HPP Chromosome-Centric Human Proteome Project

Maps the human protein subset or parts list coded by genes on each chromosome.…

Maps the human protein subset or parts list coded by genes on each chromosome. C-HPP aims to define the full set of proteins encoded in each chromosome through development of a standardized approach…

ProteomicsDB
Dataset

ProteomicsDB

Enables navigation of proteomes, provides biological insight and fosters the…

Enables navigation of proteomes, provides biological insight and fosters the development of proteomic technology. ProteomicsDB is a mass-spectrometry-based draft of the human proteome and a public,…

HipSci
Dataset

HipSci human induced pluripotent Stem cells initiative

Generates human induced pluripotent stem cells (iPSCs) from hundreds of healthy…

Generates human induced pluripotent stem cells (iPSCs) from hundreds of healthy individuals as well as patients diagnosed with selected diseases. HipSci is a powerful resource to evaluate and…

ParameciumDB
Dataset

ParameciumDB

Provides data about the model organism Paramecium tetraurelia. ParameciumDB was…

Provides data about the model organism Paramecium tetraurelia. ParameciumDB was created by using components of the Generic Model Organism Database (GMOD). It offers data about gene expression data…

FlyDev
Dataset

FlyDev

Helps to study molecular or phenotypic effects of yet uncharacterized proteins.…

Helps to study molecular or phenotypic effects of yet uncharacterized proteins. FlyDev is a database and a visualization tool that provides high resolution proteomes of Drosophila melanogaster.…

Phosphomouse
Dataset

Phosphomouse

A web-based resource to aid analysis of existing biological data and inspire…

A web-based resource to aid analysis of existing biological data and inspire future biological investigations. Phosphomouse presents experimental data about tissue-specific protein abundance and…

FlyMine
Dataset

FlyMine

A data warehouse that addresses one of the important challenges of modern…

A data warehouse that addresses one of the important challenges of modern biology: how to integrate and make use of the diversity and volume of current biological data. Its main focus is genomic and…

HumanPSD
Dataset

HumanPSD Human Proteome Survey Database

Compiles properties of more than 53 000 characterized mammalian proteins.…

Compiles properties of more than 53 000 characterized mammalian proteins. HumanPSD provides association of human proteins with diseases and their potential utilization as biomarkers. It reports drugs…

PPDB
Dataset

PPDB Plant Proteomics DataBase

Provides an integrated resource for experimentally identified proteins in…

Provides an integrated resource for experimentally identified proteins in Arabidopsis and maize (Zea mays).

PPD
Dataset

PPD Plasma Proteome Database

Hosts qualitative and quantitative information on proteins (including those…

Hosts qualitative and quantitative information on proteins (including those from MRM-based assays) reported in plasma and serum and hence serves as reference platform for biomarker discovery.

Colorectal…
Dataset

Colorectal cancer atlas

An integrated web-based resource that catalogues the genomic and proteomic…

An integrated web-based resource that catalogues the genomic and proteomic annotations identified in colorectal cancer (CRC) tissues and cell lines. The data catalogued to-date include sequence…

EchoBASE
Dataset

EchoBASE

Contains some information from post-genomic experiments that use the model…

Contains some information from post-genomic experiments that use the model bacterium Escherichia coli K12. EchoBASE allows consultation of protein–protein interaction (PPI) data, structural data…

P3DB
Dataset

P3DB Plant Protein Phosphorylation DataBase

Provides a resource of protein phosphorylation data from multiple plants. With…

Provides a resource of protein phosphorylation data from multiple plants. With the large-scale phosphorylation data and associated web-based tools, P3DB will be a valuable resource for both plant and…

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PlaMoM
Dataset

PlaMoM Plant Mobile Macromolecules

Provides convenient and interactive search tools allowing users to retrieve, to…

Provides convenient and interactive search tools allowing users to retrieve, to analyze and also to predict mobile RNAs/proteins. Each entry in the PlaMoM database contains detailed information such…

Membranome
Dataset

Membranome Membrane Proteome

A database for proteome-wide analysis of single-pass membrane proteins.…

A database for proteome-wide analysis of single-pass membrane proteins. Membranome currently collects data on >6000 bitopic proteins from Homo sapiens, Arabidopsis thaliana, Dictyostelium…

NPD
Dataset

NPD Nuclear Protein Database

Provides an overview of the diversity of many sub-nuclear compartments. The NPD…

Provides an overview of the diversity of many sub-nuclear compartments. The NPD is a curated database and all information is supported by links to published material. This tool provides a resource…

Soybean…
Dataset

Soybean Proteome Database

Compiles information about soybean functional analysis. Soybean Proteome…

Compiles information about soybean functional analysis. Soybean Proteome Database gathers proteome data collected from plants in flooding stress conditions. It provides information about proteins…

SynDB
Dataset

SynDB

An online resource of proteins known or predicted to be related to the synapse…

An online resource of proteins known or predicted to be related to the synapse or synaptic activity.

AtNoPDB
Dataset

AtNoPDB Arabidopsis Nucleolar Protein DataBase

Provides information on 217 proteins identified in a proteomic analysis of…

Provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture.

ROUGE
Dataset

ROUGE Rodent Unidentified Gene-Encoded Large Proteins

Provides access to the results of computer-assisted sequence analysis of mouse…

Provides access to the results of computer-assisted sequence analysis of mouse homologues of KIAA cDNA (mKIAA cDNA) that were isolated. ROUGE is a subsidiary database of the Human Unidentied…

CharProtDB
Dataset

CharProtDB Characterized Protein Database

Concerns biochemically characterized proteins data. CharProtDB provides a…

Concerns biochemically characterized proteins data. CharProtDB provides a source of transitive assignments of function which allow to make annotation pipelines. This annotation contains (1) gene…

LMPD
Dataset

LMPD Lipid Maps Proteome Database

Provides access to lipid-associated protein sequences and annotations. LMPD is…

Provides access to lipid-associated protein sequences and annotations. LMPD is a database that stores more than 8.000 genes and 12.000 proteins from several species, including human. Users can browse…

PlantPReS
Dataset

PlantPReS Plant Proteome Response to Stress database

Contains protein information from manually curated articles data. PlantPReS…

Contains protein information from manually curated articles data. PlantPReS currently comprises more than 20413 entries from 456 manually curated articles, and contains 10600 unique stress responsive…

MCDRP
Dataset

MCDRP Manually Curated Database of Rice Proteins

A literature based manually curated protein centric database of rice proteins.…

A literature based manually curated protein centric database of rice proteins. MCDRP provides experimental data embedded in published articles in a computer searchable format. The database has data…

HPSF
Dataset

HPSF Human Proteome Structure and Function

Provides a repository of structure and function annotations on the…

Provides a repository of structure and function annotations on the 'missing proteins' of the human proteome. HPSF hosts missing proteins that have not been validated at protein level which…

UNcleProt
Dataset

UNcleProt Universal Nuclear Protein database of barley

Provides information about the barley nuclear proteins. UNcleProt is a database…

Provides information about the barley nuclear proteins. UNcleProt is a database containing plant nuclear proteins identified in nuclei during different stages of the cell cycle. It contributes to the…

HUMA
Dataset

HUMA Human Mutation Analysis

Provides a platform for analyzing variation. The HUMA interface includes tools…

Provides a platform for analyzing variation. The HUMA interface includes tools to analyze variation in protein sequence and structures. It contains information about sequence, structure, variation…

MAPU
Dataset

MAPU

Contains several body fluid proteomes; including plasma, urine, and…

Contains several body fluid proteomes; including plasma, urine, and cerebrospinal fluid. Cell lines have been mapped to a depth of several thousand proteins and the red blood cell proteome has also…

Human normal…
Dataset

Human normal thyroid database

Provides a large dataset of proteome of thyroid with high confidence. Human…

Provides a large dataset of proteome of thyroid with high confidence. Human normal thyroid database offers a useful reference for biomarker discovery of thyroid disease and provides insights into the…

Human normal…
Dataset

Human normal pituitary database

Provides a large dataset of proteome of pituitary with high confidence. Human…

Provides a large dataset of proteome of pituitary with high confidence. Human normal pituitary database offers a useful baseline reference for pituitary biomarker discovery and provides insight into…

NucDiff
Desktop

NucDiff

Aligns sequences and outputs information about aligned sequence regions.…

Aligns sequences and outputs information about aligned sequence regions. NucDiff is a computational package that uses the NUCmer, delta-filter and show-snps programs from MUMmer for sequence…

ARA-PEPs
Dataset

ARA-PEPs

Provides the research community with up-to-date information on putative…

Provides the research community with up-to-date information on putative peptides in A. thaliana, collected from publicly available datasets and predicted based on novel expression data. ARA-PEPs is a…

DPD
Dataset

DPD Dark Proteome Database

Provides Swiss-Prot protein information. DPD reveals the dark and non-dark…

Provides Swiss-Prot protein information. DPD reveals the dark and non-dark regions and their corresponding characterization such as disordered, transmembrane, and compositional bias. It will help…

cuticleDB
Dataset

cuticleDB

A relational database containing all structural proteins of Arthropod cuticle…

A relational database containing all structural proteins of Arthropod cuticle identified to date.

GeMDBJ Proteomics
Dataset
CPhos
Web
Desktop

CPhos

Facilitates the prioritization of phosphosites for functional experimental…

Facilitates the prioritization of phosphosites for functional experimental validation. CPhos is an information theory based algorithm with a user-friendly graphical user interface (GUI). It provides…

YeastMine
Dataset

YeastMine

Allows users to query the different types of data present in the Saccharomyces…

Allows users to query the different types of data present in the Saccharomyces Genome Database (SGD) data. YeastMine is an integrated data warehouse with precomputed tables based on the InterMine…

dbTEU
Dataset

dbTEU DataBase of Trace Element Utilization

Provides a biological trace elements database. dbTEU includes all known…

Provides a biological trace elements database. dbTEU includes all known transporters and user proteins (excluding metal-binding chaperones and regulators) for five trace elements: Cu, Mo, Ni, Co and…

UniProt…
Dataset

UniProt proteomes

Provides 'proteome' sets of proteins thought to be expressed by…

Provides 'proteome' sets of proteins thought to be expressed by organisms whose genomes have been completely sequenced. UniProt proteomes is a database that gives access to “Reference…

Strepto-DB
Dataset

Strepto-DB

A database for comparative genomics of group A and group B streptococci.

A database for comparative genomics of group A and group B streptococci.

OryzaPG-DB
Dataset

OryzaPG-DB

A rice proteome database based on shotgun proteogenomics, which incorporates…

A rice proteome database based on shotgun proteogenomics, which incorporates the genomic features of experimental shotgun proteomics data.

ScaPD
Dataset

ScaPD Scaffold Protein Database

Provides an information’s repository for scaffold proteins and associated…

Provides an information’s repository for scaffold proteins and associated signaling pathways. ScaPD contains more than 270 scaffold proteins and over 1100 distinct scaffold-mediated phosphorylation…

CrossCheck
Dataset

CrossCheck

Provides a centralized repository for published datasets. CrossCheck allows…

Provides a centralized repository for published datasets. CrossCheck allows users to compare a user-defined list of gene symbols with the software reference database. The database contains over…

AOD
Dataset

AOD AntiOxidant protein Database

Consists of a manually curated database of 710 experimentally validated…

Consists of a manually curated database of 710 experimentally validated antioxidant proteins. Information including taxonomy, source organism, subcellular location, gene ontology, catalytic activity…

SalmoBase
Dataset

SalmoBase

Provides an informational resource about Salmonid species. SalmoBase contains…

Provides an informational resource about Salmonid species. SalmoBase contains atlantic salmon genome reference, annotation and gene expression data. It offers a genome browser that allows users to…

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OmicsDI
Dataset

OmicsDI Omics Discovery Index

Permits to access, discover and disseminate omics data sets. OmicsDI is an…

Permits to access, discover and disseminate omics data sets. OmicsDI is an open-source platform that can integrate proteomics, genomics, metabolomics and transcriptomics data sets. This platform…

Listeriomics
Dataset

Listeriomics

Integrates different tools for omics data analyses. Listeriomics integrates all…

Integrates different tools for omics data analyses. Listeriomics integrates all the complete Listeria species genomes, transcriptomes, and proteomes published to date. It allows navigation among all…

CYCLoPs
Dataset

CYCLoPs Collection of Yeast Cells Localization Patterns

Provides a central platform for housing and analyzing our yeast proteome…

Provides a central platform for housing and analyzing our yeast proteome dynamics datasets at the single cell level. CYCLoPs differs from existing databases in a number of ways: (1) whereas other…

SDIndex
Web

SDIndex Structural Difficulty Index

Reflects the capability of predicting accurate structures and helps to assess…

Reflects the capability of predicting accurate structures and helps to assess the potential for developing proteome level structural databases for various organisms with some of the best…

ProteomeXchange
Dataset

ProteomeXchange

Aims to fully represent all relevant aspects of a proteomics experiment and to…

Aims to fully represent all relevant aspects of a proteomics experiment and to make them easily accessible to the user.

IPI
Dataset

IPI International Protein Index

Offers complete nonredundant data sets representing the human, mouse and rat…

Offers complete nonredundant data sets representing the human, mouse and rat proteomes, built from the Swiss-Prot, TrEMBL, Ensembl and RefSeq databases. IPI is a nonredundant human proteome set that…

PROTICdb
Dataset

PROTICdb

Allows users to manage laboratory data and publication on the Web with an…

Allows users to manage laboratory data and publication on the Web with an interface allowing sophisticated queries. PROTICdb is a database that permits annotation of data, and extraction for data…

HCVDB
Dataset

HCVDB

Provides key data about the hepatitis C virus sequences and ensures consistency…

Provides key data about the hepatitis C virus sequences and ensures consistency of the annotations, which enables reliable keyword queries.

WallProtDB
Dataset

WallProtDB

Aims at collecting cell wall proteomic experimental data. WallProtDB contains…

Aims at collecting cell wall proteomic experimental data. WallProtDB contains 2,170 proteins and ESTs identified experimentally in 36 cell wall proteomics studies performed on 11 different plant…

DynaProt 2D
Dataset

DynaProt 2D

Gathers information about proteomes and two-dimensional gels. DynaProt 2D is a…

Gathers information about proteomes and two-dimensional gels. DynaProt 2D is a database that allows users to realize a research by indicating different characteristics: gene, protein, PID or 2D gel.…

CKB
Dataset

CKB Cyanobacterial KnowledgeBase

A free access database that contains the genomic and proteomic information of…

A free access database that contains the genomic and proteomic information of 74 fully sequenced cyanobacterial genomes belonging to seven orders. CKB also contains tools for sequence analysis. The…

CSPA
Dataset

CSPA Cell Surface Protein Atlas

Provides cellular surfaceome snapshots at high resolution. The CSPA is…

Provides cellular surfaceome snapshots at high resolution. The CSPA is presented in form of an easy-to-navigate interactive database, a downloadable data matrix and with tools for targeted surfaceome…

BioAfrica
Dataset

BioAfrica

Provides information on Human Immunodeficiency Virus (HIV) proteins. BioAfrica…

Provides information on Human Immunodeficiency Virus (HIV) proteins. BioAfrica is a resource collaborating with Swiss-Prot ViralZone group of the Swiss Institute of Bioinformatics (SIB). The database…

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Newt-omics
Dataset

Newt-omics

Provides access to expressed genes during tissue regeneration. Newt-omics is a…

Provides access to expressed genes during tissue regeneration. Newt-omics is a data repository for Notopthalmus viridescens containing Transcriptome and proteome data, as well as annotation and…

Nutritious…
Dataset

Nutritious Rice for the World

A large dataset of models encompassing more than 60,000 small proteins and…

A large dataset of models encompassing more than 60,000 small proteins and protein domains for the rice. For each protein sequence, 5 top structures were chosen using a novel clustering methodology…

H-EPD
Dataset

H-EPD H-Inv Extended Protein Database

Presents a strategy of database-driven proteome research that makes full use of…

Presents a strategy of database-driven proteome research that makes full use of transcriptome data. H-EPD is a merged data set of H-Inv proteins and other protein databases. It also provides another…

FSRD
Dataset

FSRD Fungal Stress Response Database

Collects information about homology search and annotation data gained for 28…

Collects information about homology search and annotation data gained for 28 species representing three major phyla of Fungi. FSRD compiles Fungal stress response proteins from the AmiGO database and…

Medicago…
Dataset

Medicago PhosphoProtein Database

A repository built to house phosphoprotein, phosphopeptide, and phosphosite…

A repository built to house phosphoprotein, phosphopeptide, and phosphosite data specific to Medicago. Medicago PhosphoProtein Database holds 3457 unique phosphopeptides that contain 3404…

TMIG-2DPage
Dataset
ShrimpGPAT
Dataset

ShrimpGPAT

A free and easily accessed service for the shrimp research community that…

A free and easily accessed service for the shrimp research community that provides a comprehensive and up-to-date database of quality-filtered decapod gene and protein sequences together with…

Atlas of Maize…
Dataset

Atlas of Maize Proteotypes

Quantifies protein abundance and phosphorylation levels across developmental…

Quantifies protein abundance and phosphorylation levels across developmental time. The Atlas of Maize Proteotypes comprises 14165 proteins and 18405 phosphopeptides, quantified across eight tissues.…

ProPepper
Dataset

ProPepper

A database of cereal prolamin epitopes, peptides and proteins for expert users…

A database of cereal prolamin epitopes, peptides and proteins for expert users that are dealing with protein chemistry, proteomics and mass spectrometry, method developments and related applications…

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The L.…
Dataset

The L. monocytogenes 10403S BioCyc database

A resource for researchers studying Listeria and related organisms. The L.…

A resource for researchers studying Listeria and related organisms. The L. monocytogenes 10403S BioCyc database allows users to (i) have a comprehensive view of all reactions and pathways predicted…

FR database
Dataset

FR database

A database using manual curation from 38 423 articles published before 1 April…

A database using manual curation from 38 423 articles published before 1 April 2014, and integrating protein interactomes and several transcriptome datasets. FR database provides detailed information…

CyanOmics
Dataset

CyanOmics

A database based on the results of Synechococcus sp. PCC 7002 omics studies.…

A database based on the results of Synechococcus sp. PCC 7002 omics studies. CyanOmics comprises one genomic dataset, 29 transcriptomic datasets and one proteomic dataset and should prove useful for…

MouseMine
Dataset

MouseMine

Supports powerful query, reporting, and analysis capabilities over a…

Supports powerful query, reporting, and analysis capabilities over a significant portion of the MGI database. The main source of MouseMine data is the Mouse Genome Informatics, which includes a…

SPGDB
Dataset

SPGDB Streptococcus pneumoniae Genome Database

Integrates and analyzes the completely sequenced and available S. pneumoniae…

Integrates and analyzes the completely sequenced and available S. pneumoniae genome sequences. Further, links to several tools are provided to compare the pool of gene and protein sequences, and…

hpvPDB
Dataset

hpvPDB Human papillomavirus Proteome DataBase

Domiciles proteomic and genomic information on 150 HPV strains sequenced to…

Domiciles proteomic and genomic information on 150 HPV strains sequenced to date. Retreival of such vast information from different resources with a provision of prediction and validation of proteins…

MASCP gator
Dataset

MASCP gator

An aggregation portal for Arabidopsis proteomic data currently being produced…

An aggregation portal for Arabidopsis proteomic data currently being produced by the community and unites a large collection of specialized resources to a single portal.

WheatGenome.inf…
Dataset

WheatGenome.info

An integrated database resource which includes multiple web-based applications.…

An integrated database resource which includes multiple web-based applications. These include a GBrowse2-based wheat genome viewer with BLAST search portal, TAGdb for searching wheat…

SWICZ
Dataset

SWICZ

Hosts a proteomics database for Streptomyces, Caulobacter and Neisseria. SWICZ…

Hosts a proteomics database for Streptomyces, Caulobacter and Neisseria. SWICZ contains knowledge based data of time series of protein expression for various stages of development of the given…

IntegromeDB
Dataset

IntegromeDB

A biological web search engine based on the Semantic Web technologies. The…

A biological web search engine based on the Semantic Web technologies. The IntegromeDB search engine allows scanning data on gene regulation, gene expression, protein-protein interactions, pathways,…

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Optimas-DW
Dataset

Optimas-DW OPTIMAS Data Warehouse

A comprehensive data collection for maize. Optimas-DW integrates data from…

A comprehensive data collection for maize. Optimas-DW integrates data from different data domains such as transcriptomics, metabolomics, ionomics, proteomics and phenomics. A web interface allows…

EFG
Dataset

EFG Electronic resource for Fusarium Graminearum

Assists users to better understand the Fusarium graminearum plant pathogen. EFG…

Assists users to better understand the Fusarium graminearum plant pathogen. EFG is a database that integrates different kinds of data, including genome information, proteome information and…

OpenfluDB
Dataset

OpenfluDB OpenFlu database

An algorithm was developed to act as the interface between EMPRES-i disease…

An algorithm was developed to act as the interface between EMPRES-i disease event data and publicly available influenza virus sequences in OpenfluDB.

HPV Sequence…
Dataset

HPV Sequence Database

Provides genetic sequences of papillomaviruses and related cellular proteins.…

Provides genetic sequences of papillomaviruses and related cellular proteins. HPV Sequence Database contains alignments of the papillomavirus genes, phylogenetic trees of the papillomavirus groups…

PrFEcT-Predict
Dataset

PrFEcT-Predict

Provides a compilation of resources about several proteomes. PrFEcT-Predict…

Provides a compilation of resources about several proteomes. PrFEcT-Predict contains precomputed 3D structure models, secondary structure predictions, disordered regions, and predicted functions.

DOGAN
Dataset

DOGAN

Provides a genome database of microorganisms sequenced at National Institute of…

Provides a genome database of microorganisms sequenced at National Institute of Technology and Evaluation (NITE).

CloneCollection
Dataset

CloneCollection

Contains a collection of statistics concerning: kinases, cell death, membrane…

Contains a collection of statistics concerning: kinases, cell death, membrane proteins, nuclear proteins, metabolism, signal transduction, secreted proteins, and transcription factors.…

LepChorionDB
Dataset

LepChorionDB

A relational database, containing all Lepidoptera chorion proteins identified…

A relational database, containing all Lepidoptera chorion proteins identified to date. Lepidoptera chorion proteins can be classified in two major protein families, A and B. This classification was…

iProX
Dataset

iProX

An integrated Proteome resources center in China. Currently, iProX is composed…

An integrated Proteome resources center in China. Currently, iProX is composed of a proteomics database and an experiment data submission system. iProX encourages and welcomes direct user submissions…

Genolevures
Dataset

Genolevures

Provides access to data about complete and seven partial genome sequences and…

Provides access to data about complete and seven partial genome sequences and exploratory tools. Genolevures contained data produced by the Genolevures Consortium, which explores eukaryote genome…

Integr8
Dataset

Integr8

Offers interactive access to data integrated from Genome Reviews and other…

Offers interactive access to data integrated from Genome Reviews and other resources, centred around organisms with completely sequenced genomes. Integr8 contains statistical analyses of those…

NOPdb
Dataset

NOPdb Nucleolar Proteome Database

Gathers information about archive all the human nucleolar proteins identified…

Gathers information about archive all the human nucleolar proteins identified by mass spectrometry (MS) analyses. NOPdb contains (i) information on gene sequences and chromosomal localization, (ii)…

Sys-BodyFluid
Dataset

Sys-BodyFluid

It contains eleven kinds of body fluid proteomes, including plasma/serum,…

It contains eleven kinds of body fluid proteomes, including plasma/serum, urine, cerebrospinal fluid, saliva, bronchoalveolar lavage fluid, synovial fluid, nipple aspirate fluid, tear fluid, seminal…

UCSC Proteome…
Dataset

UCSC Proteome Browser

Complements the Genome Browser in covering the proteome world. UCSC Proteome…

Complements the Genome Browser in covering the proteome world. UCSC Proteome Browser provides a wealth of protein information presented in the form of graphical images of tracks, histograms and links…

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SYSTOMONAS
Dataset

SYSTOMONAS

Compiles data about the pseudomonas. SYSTOMONAS registers information on eight…

Compiles data about the pseudomonas. SYSTOMONAS registers information on eight different Pseudomonas species and strains, which genomes have been completely sequenced and functionally annotated. The…

Dynamic…
Dataset

Dynamic Proteomics

Consists in a compendium of endogenously tagged human proteins and their…

Consists in a compendium of endogenously tagged human proteins and their time-lapse microscopy movies. Dynamic Proteomics provides the annotation of the tagged proteins, alignment of protein dynamics…

PepSeeker
Dataset

PepSeeker

Captures and stores peptide identification information. PepSeeker allows users…

Captures and stores peptide identification information. PepSeeker allows users to query it to help mine rules and explore fragmentation patterns observed in peptide sequences studied in the mass…

dbDEPC
Dataset

dbDEPC database of Differentially Expressed Proteins in Human Cancer

A database with the goal of collecting curated cancer proteomics data. dbDEPC…

A database with the goal of collecting curated cancer proteomics data. dbDEPC provides a resource for information on protein-level expression changes. It explores protein profile differences among…

MfunGD
Dataset

MfunGD

Provides a resource for annotated mouse proteins and their occurrence in…

Provides a resource for annotated mouse proteins and their occurrence in protein networks.

Reactome…
Dataset

Reactome BioMart

Allows user to explore post-translational modification (PTM) details for a…

Allows user to explore post-translational modification (PTM) details for a protein. Reactome Biomart is an online resource that can retrieve and integrate protein phosphorylation data. It gathers…

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