Arabidopsis Nucleolar Protein DataBase
Arabidopsis Nucleolar Protein DataBase
AtNoPDB
Provides information on 217 proteins identified in a proteomic analysis of nucleoli…
Provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture.
Cell Surface Protein Atlas
Cell Surface Protein Atlas
CSPA
Provides cellular surfaceome snapshots at high resolution. The CSPA is presented in form…
Provides cellular surfaceome snapshots at high resolution. The CSPA is presented in form of an easy-to-navigate interactive database, a downloadable data matrix and with tools for targeted surfaceome rediscovery. The cellular surfaceome snapshots of…
Colorectal cancer atlas
Colorectal cancer atlas
An integrated web-based resource that catalogues the genomic and proteomic annotations…
An integrated web-based resource that catalogues the genomic and proteomic annotations identified in colorectal cancer (CRC) tissues and cell lines. The data catalogued to-date include sequence variations as well as quantitative and non-quantitative…
database of Differentially Expressed Proteins in…
database of Differentially Expressed Proteins in Human Cancer
dbDEPC
A database with the goal of collecting curated cancer proteomics data. dbDEPC provides a…
A database with the goal of collecting curated cancer proteomics data. dbDEPC provides a resource for information on protein-level expression changes. It explores protein profile differences among different cancers. dbDEPC is expected to be a…
FlyMine
FlyMine
A data warehouse that addresses one of the important challenges of modern biology: how to…
A data warehouse that addresses one of the important challenges of modern biology: how to integrate and make use of the diversity and volume of current biological data. Its main focus is genomic and proteomics data for Drosophila and other insects.…
Genome Medicine Database of Japan Proteomics
Genome Medicine Database of Japan Proteomics
GeMDBJ Proteomics
An integrated proteome database for use in cancer research.
An integrated proteome database for use in cancer research.
Human papillomavirus Proteome DataBase
Human papillomavirus Proteome DataBase
hpvPDB
Domiciles proteomic and genomic information on 150 HPV strains sequenced to date.…
Domiciles proteomic and genomic information on 150 HPV strains sequenced to date. Retreival of such vast information from different resources with a provision of prediction and validation of proteins structures would help researchers in designing…
iProX
iProX
An integrated Proteome resources center in China. Currently, iProX is composed of a…
An integrated Proteome resources center in China. Currently, iProX is composed of a proteomics database and an experiment data submission system. iProX encourages and welcomes direct user submissions of protein and peptide identification data to be…
LepChorionDB
LepChorionDB
A relational database, containing all Lepidoptera chorion proteins identified to date.…
A relational database, containing all Lepidoptera chorion proteins identified to date. Lepidoptera chorion proteins can be classified in two major protein families, A and B. This classification was based on multiple sequence alignments of conserved…
Manually Curated Database of Rice Proteins
Manually Curated Database of Rice Proteins
MCDRP
A unique curated database of rice proteins based on published experimental data.
A unique curated database of rice proteins based on published experimental data.
MAPU
MAPU
Contains several body fluid proteomes; including plasma, urine, and cerebrospinal fluid.…
Contains several body fluid proteomes; including plasma, urine, and cerebrospinal fluid. Cell lines have been mapped to a depth of several thousand proteins and the red blood cell proteome has also been analyzed in depth.
MASCP gator
MASCP gator
An aggregation portal for Arabidopsis proteomic data currently being produced by the…
An aggregation portal for Arabidopsis proteomic data currently being produced by the community and unites a large collection of specialized resources to a single portal.
MfunGD
MfunGD
Provides a resource for annotated mouse proteins and their occurrence in protein networks.
Provides a resource for annotated mouse proteins and their occurrence in protein networks.
neXtProt
neXtProt
A human protein-centric knowledge platform. Developed at the Swiss Institute of…
A human protein-centric knowledge platform. Developed at the Swiss Institute of Bioinformatics (SIB), it aims to help researchers answer questions relevant to human proteins. To achieve this goal, neXtProt is built on a corpus containing both…
OryzaPG-DB
OryzaPG-DB
A rice proteome database based on shotgun proteogenomics, which incorporates the genomic…
A rice proteome database based on shotgun proteogenomics, which incorporates the genomic features of experimental shotgun proteomics data.
Plant Protein Phosphorylation DataBase
Plant Protein Phosphorylation DataBase
P3DB
Provides a resource of protein phosphorylation data from multiple plants. With the…
Provides a resource of protein phosphorylation data from multiple plants. With the large-scale phosphorylation data and associated web-based tools, P3DB will be a valuable resource for both plant and nonplant biologists in the field of protein…
Plant Proteomics DataBase
Plant Proteomics DataBase
PPDB
Provides an integrated resource for experimentally identified proteins in Arabidopsis and…
Provides an integrated resource for experimentally identified proteins in Arabidopsis and maize (Zea mays).
Plasma Proteome Database
Plasma Proteome Database
PPD
Hosts qualitative and quantitative information on proteins (including those from…
Hosts qualitative and quantitative information on proteins (including those from MRM-based assays) reported in plasma and serum and hence serves as reference platform for biomarker discovery.
ProPepper
ProPepper
A database of cereal prolamin epitopes, peptides and proteins for expert users that are…
A database of cereal prolamin epitopes, peptides and proteins for expert users that are dealing with protein chemistry, proteomics and mass spectrometry, method developments and related applications in food science, agricultural breeding or medical…
ProteINSIDE
ProteINSIDE
Provides an overview of the biological information stored in public databases or provided…
Provides an overview of the biological information stored in public databases or provided by annotations according to the Gene Ontology, (II) predicts proteins that are secreted to search for proteins that mediate signalisation between cells or…
ProteomExchange
ProteomExchange
Aims to fully represent all relevant aspects of a proteomics experiment and to make them…
Aims to fully represent all relevant aspects of a proteomics experiment and to make them easily accessible to the user.
PRoteomics IDEntifications database
PRoteomics IDEntifications database
PRIDE
A centralized, standards compliant, public data repository for proteomics data, including…
A centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE is a core member in the ProteomeXchange (PX)…
ShrimpGPAT
ShrimpGPAT
A free and easily accessed service for the shrimp research community that provides a…
A free and easily accessed service for the shrimp research community that provides a comprehensive and up-to-date database of quality-filtered decapod gene and protein sequences together with putative functional prediction and sequence analysis…
SynDB
SynDB
An online resource of proteins known or predicted to be related to the synapse or…
An online resource of proteins known or predicted to be related to the synapse or synaptic activity.
Sys-BodyFluid
Sys-BodyFluid
It contains eleven kinds of body fluid proteomes, including plasma/serum, urine,…
It contains eleven kinds of body fluid proteomes, including plasma/serum, urine, cerebrospinal fluid, saliva, bronchoalveolar lavage fluid, synovial fluid, nipple aspirate fluid, tear fluid, seminal fluid, human milk and amniotic fluid.
UniProt proteomes
UniProt proteomes
UniProt provides 'proteome' sets of proteins thought to be expressed by…
UniProt provides 'proteome' sets of proteins thought to be expressed by organisms whose genomes have been completely sequenced. It may include both manually reviewed (UniProtKB/Swiss-Prot) and unreviewed (UniProtKB/TrEMBL) entries.
WallProtDB
WallProtDB
Aims at collecting cell wall proteomic experimental data. WallProtDB contains 2,170…
Aims at collecting cell wall proteomic experimental data. WallProtDB contains 2,170 proteins and ESTs identified experimentally in 36 cell wall proteomics studies performed on 11 different plant species. Two criteria have to be met for entering…