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Proteome and metabolome software tools and databases

Proteomes are characterized by large protein-abundance differences, cell-type- and time-dependent expression patterns and post-translational modifications, all of which carry biological information that is not accessible by genomics or…

Proteomics & Metabolomics applications

Experts in Proteomics & Metabolomics

They share and annotate bioinformatics tools

  • Stephen Osborne's avatar image
    Stephen Osborne
    Pastel BioScience Limited, The Sussex Innovation Centre, Brighton, United Kingdom
  • Yashwanth Subbannayya's avatar image Yashwanth Subbannayya's country flag
    Yashwanth Subbannayya
    YU-IOB Center for Systems Biology and Molecular Medicine, Mangalore, India

Most recent bioinformatics tools

NRWRH
Desktop

NRWRH Network-based Random Walk with Restart on the Heterogeneous network

Infers potential drug–target interactions. NRWRH allows prediction of potential…

Infers potential drug–target interactions. NRWRH allows prediction of potential drug–target interactions by integrating the drug chemical structure information, protein sequence information, and…

DeepSF
Web

DeepSF

Classifies proteins of variable-length into all known folds defined in SCOP…

Classifies proteins of variable-length into all known folds defined in SCOP 1.75 database. DeepSF is a 1D deep convolution neural network method that directly extracts hidden features from any…

PeCoP
Web

PeCoP

Assists in finding persistently conserved positions. PeCoP is a web application…

Assists in finding persistently conserved positions. PeCoP is a web application that constructs profiles from close and distant sequence family members. It uses PSI-BLAST runs over the NCBI…

FirstGlance
Web

FirstGlance

Assists in looking at the 3D structures of proteins, DNA, RNA, and their…

Assists in looking at the 3D structures of proteins, DNA, RNA, and their complexes. FirstGlance works within a web browser and enables the readers of scientific journals to see the main features of…

Most popular analytical software and databases

footprintDB
Dataset

footprintDB

Integrates several open access repositories of curated cis-elements, DNA…

Integrates several open access repositories of curated cis-elements, DNA motifs, and TFs into a unique repository. footprintDB systematically annotates the binding interfaces of the TFs by exploiting…

PlantTFDB
Dataset

PlantTFDB Plant Transcription Factor Database

A database of functional and evolutionary study of plant transcription factors.…

A database of functional and evolutionary study of plant transcription factors. With the version 4.0, PlantTFDB offers 320 370 TFs from 165 species. Three types of annotation provide more directly…

MOLE
Desktop

MOLE

A web-based interactive application for the analysis of access/egress paths to…

A web-based interactive application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

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