Proteome and metabolome software tools and databases

Proteomes are characterized by large protein-abundance differences, cell-type- and time-dependent expression patterns and post-translational modifications, all of which carry biological information that is not accessible by genomics or…

Proteomics & Metabolomics applications

Most recent bioinformatics tools

PMD
Dataset

PMD Protein Mutant Database

Provides a compilation of protein mutant data, providing information on…

Provides a compilation of protein mutant data, providing information on functional and/or structural influences brought about by amino acid mutations at specific positions of a protein. PMD is an…

OUNRES
Desktop
VOR Calculator
Desktop

VOR Calculator

Provides a program to calculate the volume overlap ratio.

Provides a program to calculate the volume overlap ratio.

Seder
Desktop

Seder

Provides a global protein structure method. Seder is a knowledge-based function…

Provides a global protein structure method. Seder is a knowledge-based function that scores protein decoys based on their similarity to native structure. It provides a set of features constructed to…

Most popular analytical software and databases

footprintDB
Dataset

footprintDB

Integrates several open access repositories of curated cis-elements, DNA…

Integrates several open access repositories of curated cis-elements, DNA motifs, and TFs into a unique repository. footprintDB systematically annotates the binding interfaces of the TFs by exploiting…

PlantTFDB
Dataset

PlantTFDB Plant Transcription Factor Database

A database of functional and evolutionary study of plant transcription factors.…

A database of functional and evolutionary study of plant transcription factors. With the version 4.0, PlantTFDB offers 320 370 TFs from 165 species. Three types of annotation provide more directly…

MOLE
Desktop

MOLE

A web-based interactive application for the analysis of access/egress paths to…

A web-based interactive application for the analysis of access/egress paths to interior molecular voids. MOLEonline 2.0 enables platform-independent, easy-to-use and interactive analyses of…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

Curators for Proteomics & Metabolomics

  • Stephen Osborne's avatar image
    Stephen Osborne
    Pastel BioScience Limited, The…
  • Yashwanth Subbannayya's avatar image Yashwanth Subbannayya's country flag
    Yashwanth Subbannayya
    YU-IOB Center for Systems Biology…

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