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ProteomicsDB specifications

Information


Unique identifier OMICS_15468
Name ProteomicsDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Bernhard Kuster

Publication for ProteomicsDB

ProteomicsDB citations

 (22)
library_books

The 2018 Nucleic Acids Research database issue and the online molecular biology database collection

2017
Nucleic Acids Res
PMCID: 5753253
PMID: 29316735
DOI: 10.1093/nar/gkx1235

[…] hundreds of thousands of links between SNPs and curated phenotypes. In the last section proteomics databases are well-represented. An update is presented on the major quantitative proteomics resource proteomicsDB (). Its protein-centric view links to an impressive variety of visualisations and to different kinds of omics data. Future plans include an extension from its current human focus to model […]

library_books

Human canonical CD157/Bst1 is an alternatively spliced isoform masking a previously unidentified primate specific exon included in a novel transcript

2017
Sci Rep
PMCID: 5698419
PMID: 29162908
DOI: 10.1038/s41598-017-16184-w

[…] ated by peptide evidence indicating production of CD157-002 protein in vivo: a tryptic peptide (EPPVLHTTQNK) encoded by exon 1b (aa 1–9 of the peptide) and exon 2 (aa 10–11) was identified in the www.proteomicsdb.org database as belonging to the 333 aa form of CD157 (acc. no. A6NC48). The peptide is shown boxed within the CD157-002 sequence in Fig. . […]

library_books

Self domestication in Homo sapiens: Insights from comparative genomics

2017
PLoS One
PMCID: 5646786
PMID: 29045412
DOI: 10.1371/journal.pone.0185306

[…] nd adrenal glands. For this, we relied on the following resources: Brainspan (http://www.brainspan.org), Human Brain Transcriptome (http://hbatlas.org), Bgee (http://bgee.org), Proteomics DB (https://proteomicsdb.org), Human Protein Atlas (http://www.proteinatlas.org), Gene Enrichment Profiler (http://xavierlab2.mgh.harvard.edu/EnrichmentProfiler/index.html), and GTex (http://www.gtexportal.org). […]

library_books

Sequence structure relationships, expression profiles, and disease associated mutations in the paralogs of phosphoglucomutase 1

2017
PLoS One
PMCID: 5570346
PMID: 28837627
DOI: 10.1371/journal.pone.0183563

[…] a on PGM1 and its four paralogs. These databases contain a wealth of RNA and protein expression data on these five proteins that well exceeds that in published studies. Among the available databases, ProteomicsDB [] (https://www.proteomicsdb.org/) was found to be quite comprehensive and generally representative; for an alternate resource, see . Protein and RNA expression data for 30 human tissues […]

library_books

Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events

2017
Mol Biol Evol
PMCID: 5850651
PMID: 28957512
DOI: 10.1093/molbev/msx212

[…] Peptide evidence from large-scale mass spectrometry studies was extracted from PRIDE (), PeptideAtlas (), ProteomicsDB (), and Human Proteome Map (). A peptide was considered to support the protein expression of an isoform only if 1) when performing BLAT similarity searches against all human proteins (Ref […]

library_books

Serum Neuroinflammatory Disease Induced Central Nervous System Proteins Predict Clinical Onset of Experimental Autoimmune Encephalomyelitis

2017
Front Immunol
PMCID: 5512177
PMID: 28769926
DOI: 10.3389/fimmu.2017.00812

[…] ccordance to previous studies (). (iii) CNS tissue-specific or primary expression (i.e., NDICPs) based on bioinformatic analysis with tools provided by the EMBL-EBI expression atlas (), MOPED (), and ProteomicsDB (). Ubiquitously expressed or non-primarily CNS-expressed proteins were excluded (e.g., actin, tubulin, and enzymes of glycolysis). (iv) A human homolog to increase the utility of the can […]

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