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ProteoSign specifications
Information
| Unique identifier | OMICS_18441 |
|---|---|
| Name | ProteoSign |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | The input file(s) should be made out of merging multiple LC-MS/MS runs (fractionation, replication) of a single, possibly multiplexed, experiment and should not be the result of merging different or parallel experiments. |
| Input format | TXT |
| Programming languages | Javascript, PHP |
| Computer skills | Basic |
| Version | 1.0 |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Ioannis Iliopoulos
Publication for ProteoSign
2017 Nucleic Acids Res
PMCID: 5793730
PMID: 28520987
DOI: 10.1093/nar/gkx444
ProteoSign citation
library_books
Calcitriol Supplementation Causes Decreases in Tumorigenic Proteins and Different Proteomic and Metabolomic Signatures in Right versus Left Sided Colon Cancer
2018
PMCID: 5875995
PMID: 29324674
DOI: 10.3390/metabo8010005
[…] determine the false discovery rate (FDR) set to 0.01. iTRAQ 8-plex was used as the reporter ion quantitation type as well as instrument Orbitrap MS and MS/MS. Further data analysis was performed with ProteoSign, a web-based software for differential protein analysis []. Functional classification was performed using Ingenuity Pathway Analysis (IPA). […]
ProteoSign institution(s)
Medical School, Division of Basic Sciences, University of Crete, Heraklion, Greece; Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford, UK; Lawrence Berkeley National Labs, DOE Joint Genome Institute, Walnut Creek, CA, USA; Institute of Molecular Biology and Biotechnology, FORTH, Heraklion, Greece; Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA
ProteoSign funding source(s)
Supported by Wellcome Trust [WT094296MA and EU-FP7 ‘Sybilla’ number 201106]; EU-FP7 project InnovCrete.
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