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ProtIdent specifications

Information


Unique identifier OMICS_18487
Name ProtIdent
Alternative name PROTease IDENTifier
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A protein sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline Hong-Bin Shen
  • person_outline Kuo-Chen Chou

Publication for PROTease IDENTifier

ProtIdent citations

 (3)
library_books

Proteases of Dermatophagoides pteronyssinus

2017
Int J Mol Sci
PMCID: 5486027
PMID: 28587273
DOI: 10.3390/ijms18061204

[…] For the purposes of this study, a protease is defined by homology to the PROTIDENT database of known proteases [], which is a curated list of the much larger and more encompassing MEROPS database []. PROTIDENT consists of 3051 proteases of all five classes, the sequences o […]

library_books

Cupincin: A Unique Protease Purified from Rice (Oryza sativa L.) Bran Is a New Member of the Cupin Superfamily

2016
PLoS One
PMCID: 4827828
PMID: 27064905
DOI: 10.1371/journal.pone.0152819

[…] might or may not posses any enzymatic activity [–]. Submission of the deduced sequence of cupincin to MEROPS (merops.sanger.ac.uk) database, a comprehensive data base of proteases and inhibitors and Protident [(http://www.csbio.sjtu.edu.cn/bioinf/Protease/), ()] showed negative results, however submission of modelled 3D structure of cupincin to PMAP database [] (http://www.proteolysis.org) which […]

library_books

Find novel dual agonist drugs for treating type 2 diabetes by means of cheminformatics

2013
Drug Des Devel Ther
PMCID: 3623550
PMID: 23630413
DOI: 10.2147/DDDT.S42113

[…] ein-coupled receptors and their types,, iLoc-Euk and iLoc-Hum for predicting subcellular localization of eukaryotic and human proteins,, NR-2L for identifying nuclear receptors and their subfamilies, ProtIdent for identifying proteases and their types, and HIVcleave for predicting human immunodeficiency virus protease cleavage sites in proteins,, can provide timely and very useful information, as […]

Citations

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ProtIdent institution(s)
Institute of Image Processing & Pattern Recognition, Shanghai Jiaotong University, Shanghai, China; Gordon Life Science Institute, Bioinformatics and Drug Delivery, San Diego, CA, USA
ProtIdent funding source(s)
Supported by the National Natural Science Foundation of China (Grant No. 60704047) and sponsored by Shanghai Pujiang Program.

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