ProTIE specifications


Unique identifier OMICS_25718
Name ProTIE
Alternative name Proteogenomics Integration Engine
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Cenk Sahinalp
  • person_outline Alex Gawronski
  • person_outline Yen-Yi Lin

Publication for Proteogenomics Integration Engine

ProTIE citation


Nanobio applications of quantum dots in cancer: imaging, sensing, and targeting

PMCID: 4451628
PMID: 26069481
DOI: 10.1007/s12645-011-0015-7

[…] have the high-quality syntheses. Overall revision of the different methods of nanocrystal fabrication is shown in Table . But for QD syntheses, we most use of organometallic technique (Jiang ; Yang ; Protie’re and Reiss ), which this technique and its sub-methods are illustrated and reviewed in Fig. . In this method, dimethyl cadmimum was considered as the precursor for the syntheses of high-quali […]

ProTIE institution(s)
School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; Vancouver Prostate Centre, Vancouver, BC, Canada; Department of Computer Science, Indiana University, Bloomington, IN, USA; Department of Surgery, Indiana University, School of Medicine, Indianapolis, IN, USA
ProTIE funding source(s)
Supported by NIGMS/NIH Grant No R01 GM103725-04, and the NSERC Discovery Frontiers Grant on the Cancer Genome Collaboratory.

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